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FABLE: a search engine for identifying gene mentions in MEDLINE

Tetsuro TOYODA toyop at gsc.riken.go.jp
Wed Aug 2 00:37:37 PDT 2006


Hi,
PosMed (Positional Medline) has also similar functions.
http://omicspace.riken.jp/PosMed/
Further, PosMed is able to associate a keyword with genes via indirect
inferences.

Best,
Tetsuro Toyoda.

-----Original Message-----
From: owner-gofriends at genome.stanford.edu
[mailto:owner-gofriends at genome.stanford.edu] On Behalf Of Pete White
Sent: Thursday, July 20, 2006 6:32 AM
To: gofriends at genome.stanford.edu
Subject: FABLE: a search engine for identifying gene mentions in MEDLINE

Announcing the release of FABLE v1.0, an online search engine for
identifying and normalizing names of genes and proteins in MEDLINE.
 
FABLE (Fast Automated Biomedical Literature Extraction) version 1.0 is
now
available for general viewing (unrestricted access) at
http://fable.chop.edu
<http://fable.chop.edu/> .
 
FABLE v1.0 performs document retrieval of MEDLINE abstracts for queries
of
genes, transcripts, and proteins by annotating text in a completely
automated process. The system is currently optimized for human genes.
FABLE
combines a named entity recognition extractor and a human gene
normalizer
that have been applied to all MEDLINE records. The system tracks a wide
range of commonly used synonyms and aliases for each human gene and maps
them to their official symbols. A query interface allows users to search
for
articles mentioning particular genes or proteins of interest. Identified
articles can be sorted in various ways, depending upon users'
preference,
including by relevance to the query and by journal impact factor. FABLE
also
allows users to download their articles using a variety of formats.
Feedback
regarding FABLE is both welcomed and encouraged.

FABLE v1.0 was developed by the BioIE group at the University of
Pennsylvania and the Children¹s Hospital of Philadelphia. FABLE and
BioIE
are supported in part through a grant from the National Science
Foundation.
 
FABLE is available at: http://fable.chop.edu <http://fable.chop.edu/> .
Comments and suggestions regarding FABLE are appreciated and welcomed.
 
The BioIE website is at: http://bioie.ldc.upenn.edu.




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This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
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