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looking for an expression analysis tool

Jane Lomax jane at ebi.ac.uk
Tue Jun 13 07:59:31 PDT 2006


Hi Pascale - that's the sort of thing I'm after, but it looks like GOAT 
takes the association files from the GO website, and doesn't a user to
upload their own ga file...

Jane

On Tue, 13 Jun 2006, Pascale Gaudet wrote:

> Hi Jane,
> 
> I think that's what the GOAT tool from Qikai Xu and Gad Shaulsky does
> http://dictygenome.bcm.tmc.edu/Downloads/GOAT/
> 
> "GOAT is a component of the microarray analysis tool package used in our lab to analyze Dictyostelium
> discoideum expression data. It has been extended so that it can be used to analyze GO enrichment for
> gene lists from any organism with genome-scale annotation data. GOAT is an R package with a Tk
> graphical user interface (GUI), so it can be integrated into other R based microarray data analysis
> packages such as BioConductor. "
> 
> Pascale
> 
> 
> At 03:24 PM 6/13/2006 +0100, Jane Lomax wrote:
>       Hi - does anyone devevelop, or know of, a gene expression analysis tool that uses GO, and
>       allows a user to upload their own gene association file, preferably in standard GO format?
>
>       This is useful for species with no GO annotation in the GO database.
>
>       many thanks,
>
>       Jane
>
>       --
>       Dr Jane Lomax
>       GO Editorial Office
>       EMBL-EBI
>       Wellcome Trust Genome Campus
>       Hinxton
>       Cambridgeshire, UK
>       CB10 1SD
>
>       p: +44 1223 492516
>       f: +44 1223 494468
>
>       --
>       This message is from the GOFriends moderated mailing list.  A list of public
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> -- This message is from the GOFriends moderated mailing list. A list of public announcements and
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-- 
Dr Jane Lomax
GO Editorial Office
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridgeshire, UK
CB10 1SD

p: +44 1223 492516
f: +44 1223 494468


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