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looking for an expression analysis tool
Jane Lomax
jane at ebi.ac.uk
Tue Jun 13 07:59:31 PDT 2006
Hi Pascale - that's the sort of thing I'm after, but it looks like GOAT
takes the association files from the GO website, and doesn't a user to
upload their own ga file...
Jane
On Tue, 13 Jun 2006, Pascale Gaudet wrote:
> Hi Jane,
>
> I think that's what the GOAT tool from Qikai Xu and Gad Shaulsky does
> http://dictygenome.bcm.tmc.edu/Downloads/GOAT/
>
> "GOAT is a component of the microarray analysis tool package used in our lab to analyze Dictyostelium
> discoideum expression data. It has been extended so that it can be used to analyze GO enrichment for
> gene lists from any organism with genome-scale annotation data. GOAT is an R package with a Tk
> graphical user interface (GUI), so it can be integrated into other R based microarray data analysis
> packages such as BioConductor. "
>
> Pascale
>
>
> At 03:24 PM 6/13/2006 +0100, Jane Lomax wrote:
> Hi - does anyone devevelop, or know of, a gene expression analysis tool that uses GO, and
> allows a user to upload their own gene association file, preferably in standard GO format?
>
> This is useful for species with no GO annotation in the GO database.
>
> many thanks,
>
> Jane
>
> --
> Dr Jane Lomax
> GO Editorial Office
> EMBL-EBI
> Wellcome Trust Genome Campus
> Hinxton
> Cambridgeshire, UK
> CB10 1SD
>
> p: +44 1223 492516
> f: +44 1223 494468
>
> --
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--
Dr Jane Lomax
GO Editorial Office
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridgeshire, UK
CB10 1SD
p: +44 1223 492516
f: +44 1223 494468
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