Search Mailing List Archives
looking for an expression analysis tool
Cheng, Jill
Jill_Cheng at affymetrix.com
Tue Jun 13 10:06:43 PDT 2006
Hi Jane,
NetAFFX provides a free tool which allows user to import a gene list
(GB_ACC or probeset_names), and visualize it in the context of the GO
DAG. The tool does Chi-square tests on all branches of the DAG, and
renders the GO DAG as a heat map where nodes are colored based on the
statistics, so the enriched branches can be visually identified.
The reference of the tool was published:
NetAffx Gene Ontology Mining Tool: a visual approach for microarray data
analysis.
Bioinformatics. 2004 Jun 12;20(9):1462-3. Epub 2004 Feb 12.
Jill
-----Original Message-----
From: owner-gofriends at genome.stanford.edu
[mailto:owner-gofriends at genome.stanford.edu] On Behalf Of Jane Lomax
Sent: Tuesday, June 13, 2006 7:24 AM
To: gofriends at genome.stanford.edu
Subject: looking for an expression analysis tool
Hi - does anyone devevelop, or know of, a gene expression analysis tool
that uses GO, and allows a user to upload their own gene association
file, preferably in standard GO format?
This is useful for species with no GO annotation in the GO database.
many thanks,
Jane
--
Dr Jane Lomax
GO Editorial Office
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridgeshire, UK
CB10 1SD
p: +44 1223 492516
f: +44 1223 494468
--
This message is from the GOFriends moderated mailing list. A list of
public announcements and discussion of the Gene Ontology (GO) project.
Problems with the list? E-mail:
owner-gofriends at geneontology.org
Subscribing send "subscribe" to
gofriends-request at geneontology.org
Unsubscribing send "unsubscribe" to
gofriends-request at geneontology.org
Web: http://www.geneontology.org/
--
This message is from the GOFriends moderated mailing list. A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list? E-mail: owner-gofriends at geneontology.org
Subscribing send "subscribe" to gofriends-request at geneontology.org
Unsubscribing send "unsubscribe" to gofriends-request at geneontology.org
Web: http://www.geneontology.org/
More information about the go-friends
mailing list