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June 2006 GOA release

Daniel Barrell dbarrell at ebi.ac.uk
Tue Jun 27 08:45:22 PDT 2006


June 2006: GOA releases
=======================

GOA (GO Annotation at EBI) is a project run by the European Bioinformatics
Institute that aims to provide assignments of gene products to the Gene
Ontology (GO) resource.

The data can be obtained via:

           EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/

           EBI SRS: http://srs.ebi.ac.uk. Search GOA data library

           GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/

           GO CVS: http://www.geneontology.org/GO.CVS.help.html

For further information read: http://www.ebi.ac.uk/GOA
or contact goa at ebi.ac.uk.

GOA News update:
*****************

The PDB Gene Association file has new identifiers for columns 2 and 3.
This used to contain the PDB ID and chain respectively.  The identifier
will now be written as 'PDBid_chain' (e.g. '1OA2_C') and will populate
both columns.  The new file is located here (and will be the version the
GO ftp site):

ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PDB/gene_association.goa_pdb.gz

There is also a version of the file using the old identifiers here:

ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PDB/gene_association.goa_pdb_OLD.gz

This file will not be made again.


Regards

The UniProt GOA Team







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