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chromosomal location + GO term

Ewan Birney birney at ebi.ac.uk
Thu Nov 30 03:27:43 PST 2006


On 30 Nov 2006, at 11:23, Jane Lomax wrote:

> Hi - we've had a query from a user, and I was wondering whether  
> anyone knew of any tools that might be able to help.
>
> Basically, he wants to find the chromosomal locations of all the  
> human genes associated with immune response GO terms (immune  
> response and all its child terms).
>
> Any ideas?
>


Ensembl Mart.

   - Go to Ensembl

   - Select data mining "BioMart"

   - Select human dataset

   - Select genes associated with GO terms - Immune response GO term

   - In output, select chromosome, start, end, etc




> many thanks,
>
> Jane
>
>
>
> Dr Jane Lomax
> GO Editorial Office
> EMBL-EBI
> Wellcome Trust Genome Campus
> Hinxton
> Cambridgeshire, UK
> CB10 1SD
>
> p: +44 1223 492516
> f: +44 1223 494468
>
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