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chromosomal location + GO term

Maglott, Donna (NIH/NLM/NCBI) [E] maglott at ncbi.nlm.nih.gov
Thu Nov 30 04:17:43 PST 2006


>From Entrez Gene, one can to this query:

 "immune response"[Gene Ontology] AND human[orgn]
http://tinyurl.com/yk4sro

the default report looks like this, which includes the chromosome and
band location.

 IL18 	Order cDNA clone, Links
    Official Symbol: IL18 and Name: interleukin 18
(interferon-gamma-inducing factor) [Homo sapiens]
    Other Aliases: IGIF, IL-18, IL-1g, IL1F4, MGC12320
    Other Designations: IL-1 gamma; interferon-gamma-inducing factor;
interleukin 18; interleukin-1 gamma; interleukin-18
    Chromosome: 11; Location: 11q22.2-q22.3
    MIM: 600953
    GeneID: 3606

2: KIR3DL1 	Order cDNA clone, Links
    Official Symbol: KIR3DL1 and Name: killer cell immunoglobulin-like
receptor, three domains, long cytoplasmic tail, 1 [Homo sapiens]
    Other Aliases: AMB11, CD158E1, CD158E1/2, CD158E2, CL-11, CL-2, KIR,
KIR-G1, KIR3DL1/2V, KIR3DS1, MGC119726, MGC119728, MGC126589, MGC126591,
NKAT10, NKAT3, NKB1, NKB1B
    Other Designations: KIR antigen 3DL1; NK-receptor; killer cell
immunoglobulin-like receptor 3DL1; killer cell immunoglobulin-like
receptor, three domains, short cytoplasmic tail, 1; natural killer cell
inhibitory receptor; p70 killer cell inhibitory receptor
    Chromosome: 19; Location: 19q13.4
    MIM: 604946
    GeneID: 3811 

NOTE: this does NOT include the children...

-----Original Message-----
From: Jane Lomax [mailto:jane at ebi.ac.uk] 
Sent: Thursday, November 30, 2006 6:23 AM
To: gofriends at genome.stanford.edu
Subject: chromosomal location + GO term

Hi - we've had a query from a user, and I was wondering whether anyone
knew of any tools that might be able to help.

Basically, he wants to find the chromosomal locations of all the human
genes associated with immune response GO terms (immune response and all
its child terms).

Any ideas?

many thanks,

Jane



Dr Jane Lomax
GO Editorial Office
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridgeshire, UK
CB10 1SD

p: +44 1223 492516
f: +44 1223 494468

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