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New Features in AmiGO

Rama Balakrishnan rama at genome.Stanford.EDU
Tue Oct 3 16:07:06 PDT 2006


Hi All,

We have implemented some new features and improved some
existing functionalities in AmiGO (http://www.godatabase.org). We
hope you will find these enhancements useful and as always, please
don't hesitate to send comments or suggestions.

You can either send an email to:
gohelp at geneontology.org
or
post your suggestions on the AmiGO Source Forge tracker at the  
following URL:
https://sourceforge.net/tracker/?atid=494390&group_id=36855&func=browse


List of new features-

GOst
     * Allows to submit multiple sequences (100 has been set as a  
limit by the WG)
     * More BLAST filtering options are now available: filter toggle,  
number of best hits option, and more values for expect threshold.
     * Page refreshes after submitting sequence

Main Interface-
     * Reset button to reset filters.
     * Saves filter settings
     * display of gene-product counts next to terms. This number is  
displayed only for the gene_associations and Datasource filters. You  
will not see 'chromosome (<5)' for example. Counts are displayed only  
if they are exact number of gene products.
     * assigned_by information (column #15 from the gene association  
file) is now displayed right next to the Source column for gene  
associations.
     * Term definition source (if available) is now displayed in the  
Term details page right beneath the Term Definition.

Please let us know if you have any questions.

Best,

Rama



+--- O---O  
---------------------------------------------------------------
       o-o         Rama Balakrishnan Ph.D
        O           Scientific Curator, Saccharomyces Genome Database
       o-o         Department of Genetics,  Room M339
      o---o       Stanford University
     o----o       Stanford, CA 94305-5120
    O----O       Ph: 650.725.8956
    0--o           Fax: 650.723.7016
      O             Website: http://www.yeastgenome.org
     o-o
+- o---o  
-----------------------------------------------------------------



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