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September 2006 GOA release

Daniel Barrell dbarrell at ebi.ac.uk
Wed Sep 13 08:39:35 PDT 2006


September 2006: GOA releases
=======================

GOA (GO Annotation at EBI) is a project run by the European Bioinformatics
Institute that aims to provide assignments of gene products to the Gene
Ontology (GO) resource.

The data can be obtained via:

           EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/

           EBI SRS: http://srs.ebi.ac.uk. Search GOA data library

           GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/

           GO CVS: http://www.geneontology.org/GO.CVS.help.html

For further information read: http://www.ebi.ac.uk/GOA
or contact goa at ebi.ac.uk.

GOA News update:
*****************

Please note that the version of the GOA UniProt gene association file 
available from the GO Consortium ftp site (ftp.geneontology.org)  has 
been filtered to remove annotations for those species where a different 
Consortium group is primarily responsible for providing GO annotations.
If you would like to download an unfiltered GOA UniProt gene association 
file, please use either the GOA ftp site:

ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz 


Or the submissions folder in the GO Consortium ftp site:

ftp://ftp.geneontology.org/pub/go/gene-associations/submission/gene_association.goa_uniprot.gz 


Please look at our README 
(ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/README) for further 
information on the contents of the GOA gene association files.

Species which have been filtered out of the 
gene_association.goa_uniprot.gz file on the GO Consortium site include:


Danio rerio
Drosophila melanogaster
Mus musculus
Rattus norvegicus

Arabidopsis thaliana
All rice species

Bacillus anthracis str. Ames
Campylobacter jejuni RM1221
Candida albicans
Caenorhabditis elegans
Coxiella burnetii RSA 493
Dehalococcoides ethenogenes 195
Dictyostelium sp., Dictyostelium discoideum
Geobacter sulfurreducens PCA
Glossina morsitans morsitans
Leishmania major
Listeria monocytogenes str. 4b F2365
Methylococcus capsulatus str. Bath
Pseudomonas syringae pv. tomato str. DC3000
Plasmodium falciparum
Saccharomyces cerevisiae
Schizosaccharomyces pombe
Shewanella oneidensis MR-1
Silicibacter pomeroyi DSS-3
Trypanosoma brucei
Vibrio cholerae O1 biovar eltor

(Further information on this filtering script can be found at: 
http://www.geneontology.org/GO.annotation.shtml#file).


Regards

The UniProt GOA Team









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