Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

Quantifying Specificity of GO Terms

Francisco Couto fcouto at di.fc.ul.pt
Tue Apr 24 07:44:02 PDT 2007


Hi Tobias,
you can try our web-tools:
http://xldb.fc.ul.pt/rebil/tools/ssm/
http://xldb.fc.ul.pt/biotools/proteinon/
that give you the information content of
each GO term.

Cheers,
Francisco

Tobias Sayre wrote:
> Dear GO Friends,
>
> I am working on a project that involves curation of protein data that 
> includes GO terms, and it would be very helpful if I had some 
> numerical quantification of the specificity of each term.  It is 
> possible to manually examine each term to determine this specificity, 
> but because there is a large amount of data, I would like to automate 
> the process.  I understand that there is no reliable way to do this 
> simply using the level in the DAG hierarchy, but I am wondering if any 
> of you might have a work-around.
>
> Thanks,
>
> Tobias Sayre

--
This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at geneontology.org
Subscribing   send   "subscribe"   to   gofriends-request at geneontology.org
Unsubscribing send   "unsubscribe"  to  gofriends-request at geneontology.org
Web:          http://www.geneontology.org/



More information about the go-friends mailing list