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[gofriends] Re: Fwd: Tools to Visualize/Display GO Terms

Mary Dolan Mary_Dolan at
Tue Aug 21 14:19:10 PDT 2007

Kimberly Van Auken <vanauken at> on Tuesday, August 21, 2007 at 4:00 PM -0500 wrote:
>I have also forwarded your email to the GO Friends mailing list, as 
>members of this list may be
>able to help you evaluate which tool is best suited to your needs.
>> From: Villeneuve.Dan at 
>> <mailto:Villeneuve.Dan at>
>> Date: Tue, 21 Aug 2007 13:30:32 -0500
>> Hello,
>> I have used GeneSpring to analyze a set of zebrafish microarray data.
>> As part of this analysis, I generated a list of GO categories/terms that
>> were significantly enriched for my list of differentially expressed
>> genes.  I am looking for a way to display the list in a tree-like format
>> that shows the hierarchy of the GO categories on the list.  I tried
>> submitting the list using the Advanced Search option but this doesn't
>> show the tree-like structure.  Is there a way to accomplish this using
>> AmiGO website, or do you know of other publicly available software that
>> could be used?
>> Any assistance you could provide would be appreciated.
Dear Dr. Villeneuve,
Here at MGI we have a prototype tool that I think would be of use to you:
This returns the GO DAG image with your selected nodes indicated in blue in both png and svg format -- you can also download a .dot file that can be used with GraphViz.

I hope this helps.

Mary E. Dolan, Ph.D.
Mouse Genome Informatics Consortium, The Jackson Laboratory
mdolan at

Research Faculty, NCGIA
Department of Spatial Information Science and Engineering, University of Maine
Boardman Hall 329
University of Maine
Orono, Maine 04469
fax: 207.581.2206
mary_dolan at

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