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[gofriends] GO Annotation Releases : August 2007

camon at ebi.ac.uk camon at ebi.ac.uk
Mon Aug 27 01:42:22 PDT 2007


> GOA releases: August 2007
> =======================
>
> GOA (GO Annotation at EBI) is a project run by the European Bioinformatics
> Institute that aims to provide assignments of gene products to the Gene
> Ontology (GO) resource.
>
> The data can be obtained via:
>
>            EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/
>
>            EBI SRS: http://srs.ebi.ac.uk. Search GOA data library
>
>            GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/ `
>    (updated over the weekend)
>
>            GO CVS: http://www.geneontology.org/GO.CVS.help.html
>
> For further information read: http://www.ebi.ac.uk/GOA or contact
> goa at ebi.ac.uk.
>
> Note: In this months release IEA assignments based on Swiss-Prot keyword
> assignments have increased due to more manual mappings, while mappings to
> Enzyme Commission numbers has dropped. The latter decrease is under
> investigation and may be related to a forthcoming EC number format change
> at UniProtKB. Partial EC numbers where dashes replace part of the complete
> EC number (e.g. EC 3.4.24.-) are currently used for 2 different cases:
> - when the catalytic activity of the protein is not known exactly
> - when the protein catalyzes a reaction that is known but not yet included
> in the IUBMB EC list. To distinguish between these two meanings, UniProtKB
> will soon start to use the letter 'n' instead of a dash for the latter
> case.
>
> Regards
>
> The UniProt GOA Team
>



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