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January 2007 GOA release

Daniel Barrell dbarrell at ebi.ac.uk
Fri Feb 2 07:57:47 PST 2007


Hi,

There was a bug which affected the proteome sets available here:

ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/

This meant that files at this location were missing annotations.  This 
is now fixed and the new files have been uploaded.

Regards,

Daniel

Daniel Barrell wrote:
> GOA releases: January 2007
> ===========================
> 
> GOA (GO Annotation at EBI) is a project run by the European Bioinformatics
> Institute that aims to provide assignments of gene products to the Gene
> Ontology (GO) resource.
> 
> The data can be obtained via:
> 
>            EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/
> 
>            EBI SRS: http://srs.ebi.ac.uk. Search GOA data library
> 
>            GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/
> 
>            GO CVS: http://www.geneontology.org/GO.CVS.help.html
> 
> For further information read: http://www.ebi.ac.uk/GOA
> or contact goa at ebi.ac.uk.
> 
> GOA News update:
> *****************
> 
> Please note that the version of the GOA UniProt gene association file
> available from the GO Consortium ftp site (ftp.geneontology.org)  has
> been filtered to remove annotations for those species where a different
> Consortium group is primarily responsible for providing GO annotations.
> If you would like to download an unfiltered GOA UniProt gene association
> file, please use either the GOA ftp site:
> 
> ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz 
> 
> 
> 
> Or the submissions folder in the GO Consortium ftp site:
> 
> ftp://ftp.geneontology.org/pub/go/gene-associations/submission/gene_association.goa_uniprot.gz 
> 
> 
> 
> 
> Please look at our README
> (ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/README) for further
> information on the contents of the GOA gene association files.
> 
> Species which have been filtered out of the
> gene_association.goa_uniprot.gz file on the GO Consortium site include:
> 
> 
> Danio rerio
> Drosophila melanogaster
> Mus musculus
> Rattus norvegicus
> 
> Arabidopsis thaliana
> All rice species
> 
> Bacillus anthracis str. Ames
> Campylobacter jejuni RM1221
> Candida albicans
> Caenorhabditis elegans
> Coxiella burnetii RSA 493
> Dehalococcoides ethenogenes 195
> Dictyostelium sp., Dictyostelium discoideum
> Geobacter sulfurreducens PCA
> Glossina morsitans morsitans
> Leishmania major
> Listeria monocytogenes str. 4b F2365
> Methylococcus capsulatus str. Bath
> Pseudomonas syringae pv. tomato str. DC3000
> Plasmodium falciparum
> Saccharomyces cerevisiae
> Schizosaccharomyces pombe
> Shewanella oneidensis MR-1
> Silicibacter pomeroyi DSS-3
> Trypanosoma brucei
> Vibrio cholerae O1 biovar eltor
> 
> (Further information on this filtering script can be found at:
> http://www.geneontology.org/GO.annotation.shtml#file).
> 
> 
> Regards
> 
> The UniProt GOA Team
> 
> 
> 
> -- 
> This message is from the GOFriends moderated mailing list.  A list of 
> public
> announcements and discussion of the Gene Ontology (GO) project.
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--
This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at geneontology.org
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