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January 2007 GOA release

Gabriel Berriz gberriz at hms.harvard.edu
Fri Feb 2 09:12:09 PST 2007


Hi!  Did this error affect the 200701 data published at

http://archive.godatabase.org

?

Regards,

Gabriel


On 2007.02.02 Fri, at 10:57, Daniel Barrell wrote:

> Hi,
>
> There was a bug which affected the proteome sets available here:
>
> ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/
>
> This meant that files at this location were missing annotations.   
> This is now fixed and the new files have been uploaded.
>
> Regards,
>
> Daniel
>
> Daniel Barrell wrote:
>> GOA releases: January 2007
>> ===========================
>> GOA (GO Annotation at EBI) is a project run by the European  
>> Bioinformatics
>> Institute that aims to provide assignments of gene products to the  
>> Gene
>> Ontology (GO) resource.
>> The data can be obtained via:
>>            EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/
>>            EBI SRS: http://srs.ebi.ac.uk. Search GOA data library
>>            GO FTP: ftp://ftp.geneontology.org/pub/go/gene- 
>> associations/
>>            GO CVS: http://www.geneontology.org/GO.CVS.help.html
>> For further information read: http://www.ebi.ac.uk/GOA
>> or contact goa at ebi.ac.uk.
>> GOA News update:
>> *****************
>> Please note that the version of the GOA UniProt gene association file
>> available from the GO Consortium ftp site (ftp.geneontology.org)  has
>> been filtered to remove annotations for those species where a  
>> different
>> Consortium group is primarily responsible for providing GO  
>> annotations.
>> If you would like to download an unfiltered GOA UniProt gene  
>> association
>> file, please use either the GOA ftp site:
>> ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/ 
>> gene_association.goa_uniprot.gz Or the submissions folder in the  
>> GO Consortium ftp site:
>> ftp://ftp.geneontology.org/pub/go/gene-associations/submission/ 
>> gene_association.goa_uniprot.gz Please look at our README
>> (ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/README) for further
>> information on the contents of the GOA gene association files.
>> Species which have been filtered out of the
>> gene_association.goa_uniprot.gz file on the GO Consortium site  
>> include:
>> Danio rerio
>> Drosophila melanogaster
>> Mus musculus
>> Rattus norvegicus
>> Arabidopsis thaliana
>> All rice species
>> Bacillus anthracis str. Ames
>> Campylobacter jejuni RM1221
>> Candida albicans
>> Caenorhabditis elegans
>> Coxiella burnetii RSA 493
>> Dehalococcoides ethenogenes 195
>> Dictyostelium sp., Dictyostelium discoideum
>> Geobacter sulfurreducens PCA
>> Glossina morsitans morsitans
>> Leishmania major
>> Listeria monocytogenes str. 4b F2365
>> Methylococcus capsulatus str. Bath
>> Pseudomonas syringae pv. tomato str. DC3000
>> Plasmodium falciparum
>> Saccharomyces cerevisiae
>> Schizosaccharomyces pombe
>> Shewanella oneidensis MR-1
>> Silicibacter pomeroyi DSS-3
>> Trypanosoma brucei
>> Vibrio cholerae O1 biovar eltor
>> (Further information on this filtering script can be found at:
>> http://www.geneontology.org/GO.annotation.shtml#file).
>> Regards
>> The UniProt GOA Team
>> -- 
>> This message is from the GOFriends moderated mailing list.  A list  
>> of public
>> announcements and discussion of the Gene Ontology (GO) project.
>> Problems with the list?           E-mail: owner- 
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>> Subscribing   send   "subscribe"   to   gofriends- 
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>> Web:          http://www.geneontology.org/
>
> --
> This message is from the GOFriends moderated mailing list.  A list  
> of public
> announcements and discussion of the Gene Ontology (GO) project.
> Problems with the list?           E-mail: owner- 
> gofriends at geneontology.org
> Subscribing   send   "subscribe"   to   gofriends- 
> request at geneontology.org
> Unsubscribing send   "unsubscribe"  to  gofriends- 
> request at geneontology.org
> Web:          http://www.geneontology.org/


--
This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at geneontology.org
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