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March 2007 GOA release

Daniel Barrell dbarrell at ebi.ac.uk
Thu Mar 8 03:30:52 PST 2007


GOA releases: March 2007
===========================

GOA (GO Annotation at EBI) is a project run by the European Bioinformatics
Institute that aims to provide assignments of gene products to the Gene
Ontology (GO) resource.

The data can be obtained via:

            EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/

            EBI SRS: http://srs.ebi.ac.uk. Search GOA data library

            GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/

            GO CVS: http://www.geneontology.org/GO.CVS.help.html

For further information read: http://www.ebi.ac.uk/GOA
or contact goa at ebi.ac.uk.

GOA News Update:
*****************

Users of the species-specific GOA gene association files (for the human, 
mouse, rat, arabidopsis, zebrafish, chicken and cow IPI proteomes), may 
notice the disappearance of a few InterPro2GO annotations this month, as 
InterPro2GO annotations originating from Prosite pattern matches without 
a 'known' match status are no longer incorporated into these files. This 
change will not affect the GOA UniProt gene association file and 
proteomes files as such a restriction has always been in place.

In addition, we would like to clarify that the electronic annotations 
provided by the Ensembl Compara pipeline use manual GO annotations from 
GOA's January release in combination with ortholog data from the current 
(43) Ensembl release.

Regards

The UniProt GOA Team




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