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[gofriends] a question

David Binns dbinns at ebi.ac.uk
Wed May 9 15:57:27 PDT 2007


Elham Khabiri wrote:
> Hello every one.
>  
> I plan to work with a measure to calculate the semantic similarity 
> between genes or proteins and evaluate them with the sequence 
> similarity measure like E-value and Bit Score taken from Blast tool of 
> those gene/protein pairs.
The EBI runs a project called CluSTr which calculates E-values (from 
Smith-Waterman) for all pairs of sequences in UniProt Knowledgebase. Do 
contact John Maslen for more information - sample datasets can be 
provided by arrangement.

Hope this helps,

David Binns
InterPro
EBI

-- 
David Binns
EMBL-EBI
07919445300


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