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[gofriends] a question
dbinns at ebi.ac.uk
Wed May 9 15:57:27 PDT 2007
Elham Khabiri wrote:
> Hello every one.
> I plan to work with a measure to calculate the semantic similarity
> between genes or proteins and evaluate them with the sequence
> similarity measure like E-value and Bit Score taken from Blast tool of
> those gene/protein pairs.
The EBI runs a project called CluSTr which calculates E-values (from
Smith-Waterman) for all pairs of sequences in UniProt Knowledgebase. Do
contact John Maslen for more information - sample datasets can be
provided by arrangement.
Hope this helps,
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