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[gofriends] a question

Barry Zeeberg zeebergb at mail.nih.gov
Wed May 9 11:15:23 PDT 2007


NCBI probably does an all against all BLAST like you need. Maybe contact the
help desk at NCBI to see if they have the output files available for
download.

Barry


On 5/9/07 1:56 PM, "Elham Khabiri" <elhamrose at yahoo.com> wrote:

> Hello every one.
>   
>  
>   
> I plan to work with a measure to calculate the semantic similarity between
> genes or proteins and evaluate them with the sequence similarity measure like
> E-value and Bit Score taken from Blast tool of those gene/protein pairs.
>   
>  
>   
> Does any body have a set ready like the following so that I can work with
> those genes and proteins to apply my measure on them? It is so difficult for
> me to get the bit score and e-value for 1000-2000 gene/protein pairs using the
> blast tool available online. The set that I need has the following format:
>   
>  
>   
> Gene1      Gene2        E-value   Bit score
>   
> or 
>   
> Protein1   Protein 2    E-value   Bit score
>   
>  
>   
>  
>   
> I do appreciate it in advance.
>   
>  
>   
> Elham
>   
> 
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