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[gofriends] GO tool required to create GO pie chart from set of GI numbers

Zhiliang Hu hu at animalgenome.org
Fri Nov 23 14:57:07 PST 2007


>From ncbi GI match to GO, I am afraid you have to do blast.
For GO classifications and drawing a pie chart, you may like to try:
http://www.animalgenome.org/bioinfo/tools/countgo/

Zhiliang


On Thu, 22 Nov 2007, E Dimmer wrote:

> Date: Thu, 22 Nov 2007 10:20:53 +0000
> From: E Dimmer <edimmer at ebi.ac.uk>
> To: gofriends at genome.stanford.edu
> Cc: mross7 at gmu.edu
> Subject: [gofriends] GO tool required to create GO pie chart from set of GI
>     numbers 
> 
> Hi,
>
> Does anyone know of a tool that could help Mark's query (below)?
> If so, we would be grateful if you could send any details.
>
> Thanks,
> Emily
>
> contactName: Mark Ross
> contactEmail: mross7 at gmu.edu
> contactText: Can I enter protein database GI numbers, such as from the
> NCBI database, and retrieve GO annotations?  If so, how can I do this?
> My goal is to produce the often seen pie chart representations of
> protein categorization from a broad protein analysis (biol. process,
> function or compartment).  Thank you for your help.  - Mark

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