Search Mailing List Archives

Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[gofriends] GO tool required to create GO pie chart from set of GI numbers

Ana Conesa aconesa at
Thu Nov 22 02:54:18 PST 2007

Hi Mark

You can use Blast2GO for this ( . Simply create a file 
with your identifiers, import in Blast2GO.
You should create then a Combined Graph and subsequently a Pie chart of 
your GO term assignments. Note that you can create Pies both per GO 
level or a "multilevel pie", which takes the lowest term in each branch 
that fulfills given number of annotated proteins.

Best wishes

Ana Conesa

E Dimmer wrote:
> Hi,
> Does anyone know of a tool that could help Mark's query (below)?
> If so, we would be grateful if you could send any details.
> Thanks,
> Emily
> contactName: Mark Ross
> contactEmail: mross7 at
> contactText: Can I enter protein database GI numbers, such as from the 
> NCBI database, and retrieve GO annotations?  If so, how can I do this? 
> My goal is to produce the often seen pie chart representations of 
> protein categorization from a broad protein analysis (biol. process, 
> function or compartment).  Thank you for your help.  - Mark

This message is from the GOFriends moderated mailing list.  A list of public
announcements and discussion of the Gene Ontology (GO) project.
Problems with the list?           E-mail: owner-gofriends at
Subscribing   send   "subscribe"   to   gofriends-request at
Unsubscribing send   "unsubscribe"  to  gofriends-request at

More information about the go-friends mailing list