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[gofriends] Cardiovascular physiology and muscle terms in GO
Jennifer Deegan (nee Clark)
jdeegan at ebi.ac.uk
Tue Oct 30 04:27:27 PDT 2007
Dear GO-Friends,
The improvements made at the muscle content meeting
(headed by Erika Feltrin, and hosted at CRIBI) and the cardiovascular
physiology content meeting (headed by David Hill and hosted at RGD) have
now been committed to the GO repository. They will be available for
download shortly:
http://www.geneontology.org/GO.downloads.ontology.shtml
The edits are summarized below.
If you would like to comment on the changes made, then please do so via
the curator request tracker linked from http://www.geneontology.org/.
All comments and contributions are very welcome.
Best wishes,
Jennifer Deegan
GO Curator
(On behalf of the Muscle Working Group and the Cardiovascular Physiology
Working Group.)
Here are the total numbers of changes:
Terms:
277 new terms were made.
2 term merges took place.
50 names were changed.
2 general dbxrefs were added.
Relationships:
128 new part_of relationships were made.
402 new is_a relationships were made.
33 part_of relationships were deleted.
67 is_a relationships were deleted.
Definitions:
274 definitions were added.
80 definitions were changed.
557 definition dbxrefs were added.
2 definition dbxrefs were deleted.
Synonyms:
188 new synonyms were added.
130 syonyms were assigned a scope.
21 synonyms were deleted.
The new terms added are:
GO:0014701 junctional sarcoplasmic reticulum membrane
GO:0014702 free sarcoplasmic reticulum membrane
GO:0014703 oscillatory muscle contraction
GO:0014704 intercalated disc
GO:0014705 C zone
GO:0014706 striated muscle development
GO:0014707 branchiomeric skeletal muscle development
GO:0014708 regulation of somitomeric trunk muscle development
GO:0014709 positive regulation of somitomeric trunk muscle development
GO:0014710 negative regulation of somitomeric trunk muscle development
GO:0014711 regulation of branchiomeric skeletal muscle development
GO:0014712 positive regulation of branchiomeric skeletal muscle development
GO:0014713 negative regulation of branchiomeric skeletal muscle development
GO:0014714 myoblast cell fate commitment in head
GO:0014715 myoblast cell fate commitment in trunk
GO:0014716 satellite cell asymmetric division involved in skeletal
muscle regeneration
GO:0014717 regulation of satellite cell activation involved in skeletal
muscle regeneration
GO:0014718 positive regulation of satellite cell activation involved in
skeletal muscle regeneration
GO:0014719 satellite cell activation
GO:0014720 tonic skeletal muscle contraction
GO:0014721 twitch skeletal muscle contraction
GO:0014722 regulation of skeletal muscle contraction by calcium ion
signaling
GO:0014723 regulation of skeletal muscle contraction via modulation of
calcium ion sensitivity of myofibril
GO:0014724 regulation of twitch skeletal muscle contraction
GO:0014725 regulation of extraocular skeletal muscle development
GO:0014726 negative regulation of extraocular skeletal muscle development
GO:0014727 positive regulation of extraocular skeletal muscle development
GO:0014728 regulation of the force of skeletal muscle contraction
GO:0014729 regulation of the velocity of shortening of skeletal muscle
during contraction
GO:0014730 skeletal muscle regeneration at neuromuscular junction
GO:0014731 spectrin-associated cytoskeleton
GO:0014732 skeletal muscle atrophy
GO:0014733 regulation of skeletal muscle adaptation
GO:0014734 skeletal muscle hypertrophy
GO:0014735 regulation of muscle atrophy
GO:0014736 negative regulation of muscle atrophy
GO:0014737 positive regulation of muscle atrophy
GO:0014738 regulation of muscle hyperplasia
GO:0014739 positive regulation of muscle hyperplasia
GO:0014740 negative regulation of muscle hyperplasia
GO:0014741 negative regulation of muscle hypertrophy
GO:0014742 positive regulation of muscle hypertrophy
GO:0014743 regulation of muscle hypertrophy
GO:0014744 positive regulation of muscle adaptation
GO:0014745 negative regulation of muscle adaptation
GO:0014746 regulation of tonic skeletal muscle contraction
GO:0014747 positive regulation of tonic skeletal muscle contraction
GO:0014748 negative regulation of tonic skeletal muscle contraction
GO:0014801 longitudinal sarcoplasmic reticulum
GO:0014802 terminal cisternae
GO:0014803 longitudinal sarcoplasmic reticulum lumen
GO:0014804 terminal cisternae lumen
GO:0014805 smooth muscle adaptation
GO:0014806 smooth muscle hyperplasia
GO:0014807 regulation of somitogenesis
GO:0014808 release of sequestered calcium ion by sarcoplasmic reticulum
into cytosol
GO:0014809 regulation of skeletal muscle contraction via regulation of
the release of sequestered calcium ion
GO:0014810 positive regulation of skeletal muscle contraction via
regulation of the release of sequestered calcium ion
GO:0014811 negative regulation of skeletal muscle contraction via
regulation of the release of sequestered calcium ion
GO:0014812 muscle cell migration
GO:0014813 satellite cell commitment
GO:0014814 axon regeneration at neuromuscular junction
GO:0014815 initiation of satellite cell activation by growth factor
signalling, involved in skeletal muscle regeneration
GO:0014816 satellite cell differentiation
GO:0014817 satellite cell fate specification
GO:0014818 satellite cell fate determination
GO:0014819 regulation of skeletal muscle contraction
GO:0014820 tonic smooth muscle contraction
GO:0014821 phasic smooth muscle contraction
GO:0014822 detection of wounding
GO:0014823 response to activity
GO:0014824 artery smooth muscle contraction
GO:0014825 stomach fundus smooth muscle contraction
GO:0014826 vein smooth muscle contraction
GO:0014827 intestine smooth muscle contraction
GO:0014828 distal stomach smooth muscle contraction
GO:0014829 vascular smooth muscle contraction
GO:0014830 arteriole smooth muscle contraction
GO:0014831 gastro-intestinal system smooth muscle contraction
GO:0014832 urinary bladder smooth muscle contraction
GO:0014833 satellite cell asymmetric division
GO:0014834 satellite cell compartment self-renewal involved in skeletal
muscle regeneration
GO:0014835 myoblast cell differentiation involved in skeletal muscle
regeneration
GO:0014836 myoblast cell fate commitment involved in skeletal muscle
regeneration
GO:0014837 myoblast cell fate determination involved in skeletal muscle
regeneration
GO:0014838 myoblast cell fate specification involved in skeletal muscle
regeneration
GO:0014839 myoblast migration involved in skeletal muscle regeneration
GO:0014841 satellite cell proliferation
GO:0014842 regulation of satellite cell proliferation
GO:0014843 growth factor dependent regulation of satellite cell
proliferation
GO:0014844 myoblast cell proliferation involved in skeletal muscle
regeneration
GO:0014845 stomach body smooth muscle contraction
GO:0014846 esophagus smooth muscle contraction
GO:0014847 proximal stomach smooth muscle contraction
GO:0014848 urinary tract smooth muscle contraction
GO:0014849 ureter smooth muscle contraction
GO:0014850 response to muscle activity
GO:0014852 regulation of skeletal muscle contraction by neural
stimulation via neuromuscular junction
GO:0014853 regulation of excitatory postsynaptic membrane potential
involved in skeletal muscle contraction
GO:0014854 response to inactivity
GO:0014855 striated muscle cell proliferation
GO:0014856 skeletal muscle cell proliferation
GO:0014857 regulation of skeletal muscle cell proliferation
GO:0014858 positive regulation of skeletal muscle cell proliferation
GO:0014859 negative regulation of skeletal muscle cell proliferation
GO:0014860 neurotransmitter secretion involved in control of skeletal
muscle contraction
GO:0014861 regulation of skeletal muscle contraction via membrane
action potential
GO:0014862 regulation of skeletal muscle contraction by
chemo-mechanical energy conversion
GO:0014863 detection of inactivity
GO:0014864 detection of muscle activity
GO:0014865 detection of activity
GO:0014866 skeletal myofibril assembly
GO:0014868 cross bridge cycling involved in regulation of the velocity
of shortening in skeletal muscle contraction
GO:0014869 detection of muscle inactivity
GO:0014870 response to muscle inactivity
GO:0014871 cross bridge formation involved in regulation of the
velocity of shortening in skeletal muscle contraction
GO:0014872 myoblast cell division
GO:0014873 response to muscle activity involved in regulation of muscle
adaptation
GO:0014874 response to stimulus involved in regulation of muscle adaptation
GO:0014875 detection of muscle activity involved in regulation of
muscle adaptation
GO:0014876 response to injury involved in regulation of muscle adaptation
GO:0014877 response to muscle inactivity involved in regulation of
muscle adaptation
GO:0014878 response to electrical stimulus involved in regulation of
muscle adaptation
GO:0014879 detection of electrical stimulus involved in regulation of
muscle adaptation
GO:0014880 regulation of muscle filament sliding involved in the
regulation of the velocity of shortening in skeletal muscle contraction
GO:0014881 regulation of myofibril size
GO:0014882 regulation of myofibril number
GO:0014883 transition between fast and slow fiber
GO:0014884 detection of muscle inactivity involved in regulation of
muscle adaptation
GO:0014885 detection of injury involved in regulation of muscle adaptation
GO:0014886 transition between slow and fast fiber
GO:0014887 cardiac muscle adaptation
GO:0014888 striated muscle adaptation
GO:0014889 muscle atrophy
GO:0014890 smooth muscle atrophy
GO:0014891 striated muscle atrophy
GO:0014893 response to rest involved in regulation of muscle adaptation
GO:0014894 response to denervation involved in regulation of muscle
adaptation
GO:0014895 smooth muscle hypertrophy
GO:0014896 muscle hypertrophy
GO:0014897 striated muscle hypertrophy
GO:0014898 cardiac muscle hypertrophy
GO:0014899 cardiac muscle atrophy
GO:0014900 muscle hyperplasia
GO:0014901 satellite cell activation involved in skeletal muscle
regeneration
GO:0014902 myotube differentiation
GO:0014904 myotube cell development
GO:0014905 myoblast fusion involved in skeletal muscle regeneration
GO:0014906 myotube cell development involved in skeletal muscle
regeneration
GO:0014908 myotube differentiation involved in skeletal muscle regeneration
GO:0014909 smooth muscle cell migration
GO:0014910 regulation of smooth muscle cell migration
GO:0014911 positive regulation of smooth muscle cell migration
GO:0014912 negative regulation of smooth muscle cell migration
GO:0014914 myoblast maturation involved in muscle regeneration
GO:0014915 regulation of filament sliding speed involved in regulation
of the velocity of shortening in skeletal muscle contraction
GO:0014916 regulation of lung blood pressure
GO:0003008 system process
GO:0003009 skeletal muscle contraction
GO:0003010 voluntary skeletal muscle contraction
GO:0003011 involuntary skeletal muscle contraction
GO:0003012 muscle system process
GO:0003013 circulatory system process
GO:0003014 renal system process
GO:0003015 heart process
GO:0003016 respiratory system process
GO:0003017 lymph circulation
GO:0003018 vascular process in circulatory system
GO:0003019 central nervous system control of baroreceptor feedback
GO:0003020 detection of reduced oxygen by chemoreceptors
GO:0003021 detection of increased carbon dioxide by chemoreceptors
GO:0003022 detection of pH by chemoreceptors
GO:0003023 baroreceptor detection of increased arterial stretch
GO:0003024 baroreceptor detection of decreased arterial stretch
GO:0003025 baroreceptor regulation of systemic arterial blood pressure
GO:0003026 aortic arch baroreceptor control of systemic arterial blood
pressure
GO:0003027 carotid body chemoreceptor regulation of systemic arterial
blood pressure
GO:0003028 aortic body chemoreceptor regulation of systemic arterial
blood pressure
GO:0003029 detection of hypoxic conditions in blood by carotid body
chemoreceptors
GO:0003030 detection of hydrogen ion
GO:0003031 detection of carbon dioxide
GO:0003032 detection of oxygen
GO:0003033 detection of hypoxic conditions in blood by aortic body
chemoreceptors
GO:0003034 detection of increased carbon dioxide by aortic body
chemoreceptors
GO:0003035 detection of increased carbon dioxide by carotid body
chemoreceptors
GO:0003036 detection of pH by aortic body chemoreceptors
GO:0003037 detection of pH by carotid body chemoreceptors
GO:0003038 detection of reduced oxygen by aortic body chemoreceptors
GO:0003039 detection of reduced oxygen by carotid body chemoreceptors
GO:0003040 excitation of vasomotor center by aortic body chemoreceptor
signaling
GO:0003041 excitation of vasomotor center by carotid body chemoreceptor
signaling
GO:0003042 vasoconstriction of artery during carotid body chemoreceptor
response to lowering of systemic arterial blood pressure
GO:0003043 vasoconstriction of artery during aortic body chemoreceptor
response to lowering of systemic arterial blood pressure
GO:0003044 regulation of systemic arterial blood pressure mediated by a
chemical signal
GO:0003045 regulation of systemic arterial blood pressure by physical
factors
GO:0003046 regulation of systemic arterial blood pressure by stress
relaxation
GO:0003047 regulation of systemic arterial blood pressure by epinephrine
GO:0003048 regulation of systemic arterial blood pressure by norepinephrine
GO:0003049 regulation of systemic arterial blood pressure by capillary
fluid shift
GO:0003050 regulation of systemic arterial blood pressure by atrial
natriuretic peptide
GO:0003051 angiotensin mediated drinking behavior
GO:0003052 circadian regulation of systemic arterial blood pressure
GO:0003053 circadian regulation of heart rate
GO:0003054 circadian regulation of systemic arterial blood pressure by
the suprachiasmatic nucleus
GO:0003055 circadian regulation of heart rate by the suprachiasmatic
nucleus
GO:0003056 regulation of vascular smooth muscle contraction
GO:0003057 regulation of the force of heart contraction by chemical signal
GO:0003058 hormonal regulation of the force of heart contraction
GO:0003059 increased force of heart contraction by epinephrine
GO:0003060 decreased force of heart contraction by acetylcholine
GO:0003061 increased force of heart contraction by norepinephrine
GO:0003062 chemical signal regulation of heart rate
GO:0003063 negative regulation of heart rate by acetylcholine
GO:0003064 regulation of the rate of heart contraction by hormone
GO:0003065 positive regulation of heart rate by epinephrine
GO:0003066 positive regulation of heart rate by norepinephrine
GO:0003067 circadian regulation of systemic arterial blood pressure by
hormone
GO:0003068 regulation of systemic arterial blood pressure by acetylcholine
GO:0003069 acetylcholine vasodilation involved in regulation of
systemic arterial blood pressure
GO:0003070 regulation of systemic arterial blood pressure by
neurotransmitter
GO:0003071 renal regulation of systemic arterial blood pressure
GO:0003072 renal regulation of systemic arterial blood pressure by
control of peripheral vascular resistence
GO:0003073 regulation of systemic arterial blood pressure
GO:0003074 regulation of diuresis
GO:0003075 renal regulation of systemic arterial blood pressure by
vasodilation of the peripheral vascular system
GO:0003077 negative regulation of diuresis
GO:0003078 regulation of natriuresis
GO:0003079 positive regulation of natriuresis
GO:0003080 negative regulation of natriuresis
GO:0003081 regulation of systemic arterial blood pressure by
renin-angiotensin
GO:0003082 angiotensin mediated positive regulation of renal output
GO:0003083 angiotensin mediated negative regulation of renal output
GO:0003084 positive regulation of systemic arterial blood pressure
GO:0003085 negative regulation of systemic arterial blood pressure
GO:0003086 regulation of systemic arterial blood pressure by local
renal renin-angiotensin
GO:0003087 increased force of heart contraction by neuronal epinephrine
GO:0003088 increased force of heart contraction by circulating epinephrine
GO:0003089 increased force of heart contraction by circulating
epinephrine-norepinephrine
GO:0003090 increased force of heart contraction by neuronal
epinephrine-norepinephrine
GO:0003091 renal water homeostasis
GO:0003092 renal water retention
GO:0003093 regulation of glomerular filtration
GO:0003094 glomerular filtration
GO:0003095 pressure natriuresis
GO:0003096 renal sodium ion transport
GO:0003097 renal water transport
GO:0003098 tubuloglomerular feedback
GO:0003099 positive regulation of the force of heart contraction by
chemical signal
GO:0003100 regulation of systemic arterial blood pressure by endothelin
GO:0003101 regulation of systemic arterial blood pressure by
circulatory epinephrine-norepinephrine
GO:0003102 angiotensin-mediated positive regulation of diuresis
GO:0003103 positive regulation of diuresis
GO:0003104 positive regulation of glomerular filtration
GO:0003105 negative regulation of glomerular filtration
GO:0003106 angiotensin-mediated regulation of glomerular filtration
GO:0003107 angiotensin-mediated positive regulation of natriuresis
GO:0003108 negative regulation of the force of heart contraction by
chemical signal
GO:0003109 increased force of heart contraction by circulating
norepinephrine
GO:0003110 increased force of heart contraction by neuronal norepinephrine
GO:0003111 positive regulation of heart rate by circulating epinephrine
GO:0003112 positive regulation of heart rate by neuronal epinephrine
GO:0003113 positive regulation of heart rate by neuronal norepinephrine
GO:0003114 positive regulation of heart rate by circulating norepinephrine
GO:0003115 regulation of vasoconstriction by epinephrine
GO:0003116 regulation of vasoconstriction by norepinephrine
GO:0003117 regulation of vasoconstriction by circulating norepinephrine
GO:0003118 regulation of vasoconstriction by neuronal norepinephrine
GO:0003119 regulation of vasoconstriction by neuronal epinephrine
GO:0003120 regulation of vasoconstriction by circulating epinephrine
GO:0003121 regulation of vasodilation by epinephrine
GO:0003122 regulation of vasodilation by norepinephrine
GO:0003123 regulation of vasodilation by circulating epinephrine
GO:0003124 regulation of vasodilation by neuronal epinephrine
GO:0003125 regulation of vasodilation by circulating norepinephrine
GO:0003126 regulation of vasodilation by neuronal norepinephrine
GO:0014917 positive regulation of diuresis by pressure natriuresis
GO:0014918 positive regulation of natriuresis by pressure natriuresis
--
Jennifer Deegan (nee Clark)
EMBL-European Bioinformatics Institute
Gene Ontology Consortium
--
Jennifer Deegan (nee Clark)
EMBL-European Bioinformatics Institute
Gene Ontology Consortium
--
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