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[gofriends] Cardiovascular physiology and muscle terms in GO

Jennifer Deegan (nee Clark) jdeegan at ebi.ac.uk
Tue Oct 30 04:27:27 PDT 2007


Dear GO-Friends,

The improvements made at the muscle content meeting
(headed by Erika Feltrin, and hosted at CRIBI) and the cardiovascular
physiology content meeting (headed by David Hill and hosted at RGD) have 
now been committed to the GO repository. They will be available for 
download shortly:

http://www.geneontology.org/GO.downloads.ontology.shtml

The edits are summarized below.

If you would like to comment on the changes made, then please do so via 
the curator request tracker linked from http://www.geneontology.org/. 
All comments and contributions are very welcome.

Best wishes,

Jennifer Deegan
GO Curator

(On behalf of the Muscle Working Group and the Cardiovascular Physiology
Working Group.)



Here are the total numbers of changes:

Terms:
277 new terms were made.
2 term merges took place.
50 names were changed.
2 general dbxrefs were added.

Relationships:
128 new part_of relationships were made.
402 new is_a relationships were made.
33 part_of relationships were deleted.
67 is_a relationships were deleted.

Definitions:
274 definitions were added.
80 definitions were changed.
557 definition dbxrefs were added.
2 definition dbxrefs were deleted.

Synonyms:
188 new synonyms were added.
130 syonyms were assigned a scope.
21 synonyms were deleted.

The new terms added are:

GO:0014701		junctional sarcoplasmic reticulum membrane
GO:0014702		free sarcoplasmic reticulum membrane
GO:0014703		oscillatory muscle contraction
GO:0014704		intercalated disc
GO:0014705		C zone
GO:0014706		striated muscle development
GO:0014707		branchiomeric skeletal muscle development
GO:0014708		regulation of somitomeric trunk muscle development
GO:0014709		positive regulation of somitomeric trunk muscle development
GO:0014710		negative regulation of somitomeric trunk muscle development
GO:0014711		regulation of branchiomeric skeletal muscle development
GO:0014712		positive regulation of branchiomeric skeletal muscle development
GO:0014713		negative regulation of branchiomeric skeletal muscle development
GO:0014714		myoblast cell fate commitment in head
GO:0014715		myoblast cell fate commitment in trunk
GO:0014716		satellite cell asymmetric division involved in skeletal
muscle regeneration
GO:0014717		regulation of satellite cell activation involved in skeletal
muscle regeneration
GO:0014718		positive regulation of satellite cell activation involved in
skeletal muscle regeneration
GO:0014719		satellite cell activation
GO:0014720		tonic skeletal muscle contraction
GO:0014721		twitch skeletal muscle contraction
GO:0014722		regulation of skeletal muscle contraction by calcium ion
signaling
GO:0014723		regulation of skeletal muscle contraction via modulation of
calcium ion sensitivity of myofibril
GO:0014724		regulation of twitch skeletal muscle contraction
GO:0014725		regulation of extraocular skeletal muscle development
GO:0014726		negative regulation of extraocular skeletal muscle development
GO:0014727		positive regulation of extraocular skeletal muscle development
GO:0014728		regulation of the force of skeletal muscle contraction
GO:0014729		regulation of the velocity of shortening of skeletal muscle
during contraction
GO:0014730		skeletal muscle regeneration at neuromuscular junction
GO:0014731		spectrin-associated cytoskeleton
GO:0014732		skeletal muscle atrophy
GO:0014733		regulation of skeletal muscle adaptation
GO:0014734		skeletal muscle hypertrophy
GO:0014735		regulation of muscle atrophy
GO:0014736		negative regulation of muscle atrophy
GO:0014737		positive regulation of muscle atrophy
GO:0014738		regulation of muscle hyperplasia
GO:0014739		positive regulation of muscle hyperplasia
GO:0014740		negative regulation of muscle hyperplasia
GO:0014741		negative regulation of muscle hypertrophy
GO:0014742		positive regulation of muscle hypertrophy
GO:0014743		regulation of muscle hypertrophy
GO:0014744		positive regulation of muscle adaptation
GO:0014745		negative regulation of muscle adaptation
GO:0014746		regulation of tonic skeletal muscle contraction
GO:0014747		positive regulation of tonic skeletal muscle contraction
GO:0014748		negative regulation of tonic skeletal muscle contraction
GO:0014801		longitudinal sarcoplasmic reticulum
GO:0014802		terminal cisternae
GO:0014803		longitudinal sarcoplasmic reticulum lumen
GO:0014804		terminal cisternae lumen
GO:0014805		smooth muscle adaptation
GO:0014806		smooth muscle hyperplasia
GO:0014807		regulation of somitogenesis
GO:0014808		release of sequestered calcium ion by sarcoplasmic reticulum
into cytosol
GO:0014809		regulation of skeletal muscle contraction via regulation of
the release of sequestered calcium ion
GO:0014810		positive regulation of skeletal muscle contraction via
regulation of the release of sequestered calcium ion
GO:0014811		negative regulation of skeletal muscle contraction via
regulation of the release of sequestered calcium ion
GO:0014812		muscle cell migration
GO:0014813		satellite cell commitment
GO:0014814		axon regeneration at neuromuscular junction
GO:0014815		initiation of satellite cell activation by growth factor
signalling, involved in skeletal muscle regeneration
GO:0014816		satellite cell differentiation
GO:0014817		satellite cell fate specification
GO:0014818		satellite cell fate determination
GO:0014819		regulation of skeletal muscle contraction
GO:0014820		tonic smooth muscle contraction
GO:0014821		phasic smooth muscle contraction
GO:0014822		detection of wounding
GO:0014823		response to activity
GO:0014824		artery smooth muscle contraction
GO:0014825		stomach fundus smooth muscle contraction
GO:0014826		vein smooth muscle contraction
GO:0014827		intestine smooth muscle contraction
GO:0014828		distal stomach smooth muscle contraction
GO:0014829		vascular smooth muscle contraction
GO:0014830		arteriole smooth muscle contraction
GO:0014831		gastro-intestinal system smooth muscle contraction
GO:0014832		urinary bladder smooth muscle contraction
GO:0014833		satellite cell asymmetric division
GO:0014834		satellite cell compartment self-renewal involved in skeletal
muscle regeneration
GO:0014835		myoblast cell differentiation involved in skeletal muscle
regeneration
GO:0014836		myoblast cell fate commitment involved in skeletal muscle
regeneration
GO:0014837		myoblast cell fate determination involved in skeletal muscle
regeneration
GO:0014838		myoblast cell fate specification involved in skeletal muscle
regeneration
GO:0014839		myoblast migration involved in skeletal muscle regeneration
GO:0014841		satellite cell proliferation
GO:0014842		regulation of satellite cell proliferation
GO:0014843		growth factor dependent regulation of satellite cell
proliferation
GO:0014844		myoblast cell proliferation involved in skeletal muscle
regeneration
GO:0014845		stomach body smooth muscle contraction
GO:0014846		esophagus smooth muscle contraction
GO:0014847		proximal stomach smooth muscle contraction
GO:0014848		urinary tract smooth muscle contraction
GO:0014849		ureter smooth muscle contraction
GO:0014850		response to muscle activity
GO:0014852		regulation of skeletal muscle contraction by neural
stimulation via neuromuscular junction
GO:0014853		regulation of excitatory postsynaptic membrane potential
involved in skeletal muscle contraction
GO:0014854		response to inactivity
GO:0014855		striated muscle cell proliferation
GO:0014856		skeletal muscle cell proliferation
GO:0014857		regulation of skeletal muscle cell proliferation
GO:0014858		positive regulation of skeletal muscle cell proliferation
GO:0014859		negative regulation of skeletal muscle cell proliferation
GO:0014860		neurotransmitter secretion involved in control of skeletal
muscle contraction
GO:0014861		regulation of skeletal muscle contraction via membrane
action potential
GO:0014862		regulation of skeletal muscle contraction by
chemo-mechanical energy conversion
GO:0014863		detection of inactivity
GO:0014864		detection of muscle activity
GO:0014865		detection of activity
GO:0014866		skeletal myofibril assembly
GO:0014868		cross bridge cycling involved in regulation of the velocity
of shortening in skeletal muscle contraction
GO:0014869		detection of muscle inactivity
GO:0014870		response to muscle inactivity
GO:0014871		cross bridge formation involved in regulation of the
velocity of shortening in skeletal muscle contraction
GO:0014872		myoblast cell division
GO:0014873		response to muscle activity involved in regulation of muscle
adaptation
GO:0014874		response to stimulus involved in regulation of muscle adaptation
GO:0014875		detection of muscle activity involved in regulation of
muscle adaptation
GO:0014876		response to injury involved in regulation of muscle adaptation
GO:0014877		response to muscle inactivity involved in regulation of
muscle adaptation
GO:0014878		response to electrical stimulus involved in regulation of
muscle adaptation
GO:0014879		detection of electrical stimulus involved in regulation of
muscle adaptation
GO:0014880		regulation of muscle filament sliding involved in the
regulation of the velocity of shortening in skeletal muscle contraction
GO:0014881		regulation of myofibril size
GO:0014882		regulation of myofibril number
GO:0014883		transition between fast and slow fiber
GO:0014884		detection of muscle inactivity involved in regulation of
muscle adaptation
GO:0014885		detection of injury involved in regulation of muscle adaptation
GO:0014886		transition between slow and fast fiber
GO:0014887		cardiac muscle adaptation
GO:0014888		striated muscle adaptation
GO:0014889		muscle atrophy
GO:0014890		smooth muscle atrophy
GO:0014891		striated muscle atrophy
GO:0014893		response to rest involved in regulation of muscle adaptation
GO:0014894		response to denervation involved in regulation of muscle
adaptation
GO:0014895		smooth muscle hypertrophy
GO:0014896		muscle hypertrophy
GO:0014897		striated muscle hypertrophy
GO:0014898		cardiac muscle hypertrophy
GO:0014899		cardiac muscle atrophy
GO:0014900		muscle hyperplasia
GO:0014901		satellite cell activation involved in skeletal muscle
regeneration
GO:0014902		myotube differentiation
GO:0014904		myotube cell development
GO:0014905		myoblast fusion involved in skeletal muscle regeneration
GO:0014906		myotube cell development involved in skeletal muscle
regeneration
GO:0014908		myotube differentiation involved in skeletal muscle regeneration
GO:0014909		smooth muscle cell migration
GO:0014910		regulation of smooth muscle cell migration
GO:0014911		positive regulation of smooth muscle cell migration
GO:0014912		negative regulation of smooth muscle cell migration
GO:0014914		myoblast maturation involved in muscle regeneration
GO:0014915		regulation of filament sliding speed involved in regulation
of the velocity of shortening in skeletal muscle contraction
GO:0014916		regulation of lung blood pressure
GO:0003008		system process
GO:0003009		skeletal muscle contraction
GO:0003010		voluntary skeletal muscle contraction
GO:0003011		involuntary skeletal muscle contraction
GO:0003012		muscle system process
GO:0003013		circulatory system process
GO:0003014		renal system process
GO:0003015		heart process
GO:0003016		respiratory system process
GO:0003017		lymph circulation
GO:0003018		vascular process in circulatory system
GO:0003019		central nervous system control of baroreceptor feedback
GO:0003020		detection of reduced oxygen by chemoreceptors
GO:0003021		detection of increased carbon dioxide by chemoreceptors
GO:0003022		detection of pH by chemoreceptors
GO:0003023		baroreceptor detection of increased arterial stretch
GO:0003024		baroreceptor detection of decreased arterial stretch
GO:0003025		baroreceptor regulation of systemic arterial blood pressure
GO:0003026		aortic arch baroreceptor control of systemic arterial blood
pressure
GO:0003027		carotid body chemoreceptor regulation of systemic arterial
blood pressure
GO:0003028		aortic body chemoreceptor regulation of systemic arterial
blood pressure
GO:0003029		detection of hypoxic conditions in blood by carotid body
chemoreceptors
GO:0003030		detection of hydrogen ion
GO:0003031		detection of carbon dioxide
GO:0003032		detection of oxygen
GO:0003033		detection of hypoxic conditions in blood by aortic body
chemoreceptors
GO:0003034		detection of increased carbon dioxide by aortic body
chemoreceptors
GO:0003035		detection of increased carbon dioxide by carotid body
chemoreceptors
GO:0003036		detection of pH by aortic body chemoreceptors
GO:0003037		detection of pH by carotid body chemoreceptors
GO:0003038		detection of reduced oxygen by aortic body chemoreceptors
GO:0003039		detection of reduced oxygen by carotid body chemoreceptors
GO:0003040		excitation of vasomotor center by aortic body chemoreceptor
signaling
GO:0003041		excitation of vasomotor center by carotid body chemoreceptor
signaling
GO:0003042		vasoconstriction of artery during carotid body chemoreceptor
response to lowering of systemic arterial blood pressure
GO:0003043		vasoconstriction of artery during aortic body chemoreceptor
response to lowering of systemic arterial blood pressure
GO:0003044		regulation of systemic arterial blood pressure mediated by a
chemical signal
GO:0003045		regulation of systemic arterial blood pressure by physical
factors
GO:0003046		regulation of systemic arterial blood pressure by stress
relaxation
GO:0003047		regulation of systemic arterial blood pressure by epinephrine
GO:0003048		regulation of systemic arterial blood pressure by norepinephrine
GO:0003049		regulation of systemic arterial blood pressure by capillary
fluid shift
GO:0003050		regulation of systemic arterial blood pressure by atrial
natriuretic peptide
GO:0003051		angiotensin mediated drinking behavior
GO:0003052		circadian regulation of systemic arterial blood pressure
GO:0003053		circadian regulation of heart rate
GO:0003054		circadian regulation of systemic arterial blood pressure by
the suprachiasmatic nucleus
GO:0003055		circadian regulation of heart rate by the suprachiasmatic
nucleus
GO:0003056		regulation of vascular smooth muscle contraction
GO:0003057		regulation of the force of heart contraction by chemical signal
GO:0003058		hormonal regulation of the force of heart contraction
GO:0003059		increased force of heart contraction by epinephrine
GO:0003060		decreased force of heart contraction by acetylcholine
GO:0003061		increased force of heart contraction by norepinephrine
GO:0003062		chemical signal regulation of heart rate
GO:0003063		negative regulation of heart rate by acetylcholine
GO:0003064		regulation of the rate of heart contraction by hormone
GO:0003065		positive regulation of heart rate by epinephrine
GO:0003066		positive regulation of heart rate by norepinephrine
GO:0003067		circadian regulation of systemic arterial blood pressure by
hormone
GO:0003068		regulation of systemic arterial blood pressure by acetylcholine
GO:0003069		acetylcholine vasodilation involved in regulation of
systemic arterial blood pressure
GO:0003070		regulation of systemic arterial blood pressure by
neurotransmitter
GO:0003071		renal regulation of systemic arterial blood pressure
GO:0003072		renal regulation of systemic arterial blood pressure by
control of peripheral vascular resistence
GO:0003073		regulation of systemic arterial blood pressure
GO:0003074		regulation of diuresis
GO:0003075		renal regulation of systemic arterial blood pressure by
vasodilation of the peripheral vascular system
GO:0003077		negative regulation of diuresis
GO:0003078		regulation of natriuresis
GO:0003079		positive regulation of natriuresis
GO:0003080		negative regulation of natriuresis
GO:0003081		regulation of systemic arterial blood pressure by
renin-angiotensin
GO:0003082		angiotensin mediated positive regulation of renal output
GO:0003083		angiotensin mediated negative regulation of renal output
GO:0003084		positive regulation of systemic arterial blood pressure
GO:0003085		negative regulation of systemic arterial blood pressure
GO:0003086		regulation of systemic arterial blood pressure by local
renal renin-angiotensin
GO:0003087		increased force of heart contraction by neuronal epinephrine
GO:0003088		increased force of heart contraction by circulating epinephrine
GO:0003089		increased force of heart contraction by circulating
epinephrine-norepinephrine
GO:0003090		increased force of heart contraction by neuronal
epinephrine-norepinephrine
GO:0003091		renal water homeostasis
GO:0003092		renal water retention
GO:0003093		regulation of glomerular filtration
GO:0003094		glomerular filtration
GO:0003095		pressure natriuresis
GO:0003096		renal sodium ion transport
GO:0003097		renal water transport
GO:0003098		tubuloglomerular feedback
GO:0003099		positive regulation of the force of heart contraction by
chemical signal
GO:0003100		regulation of systemic arterial blood pressure by endothelin
GO:0003101		regulation of systemic arterial blood pressure by
circulatory epinephrine-norepinephrine
GO:0003102		angiotensin-mediated positive regulation of diuresis
GO:0003103		positive regulation of diuresis
GO:0003104		positive regulation of glomerular filtration
GO:0003105		negative regulation of glomerular filtration
GO:0003106		angiotensin-mediated regulation of glomerular filtration
GO:0003107		angiotensin-mediated positive regulation of natriuresis
GO:0003108		negative regulation of the force of heart contraction by
chemical signal
GO:0003109		increased force of heart contraction by circulating
norepinephrine
GO:0003110		increased force of heart contraction by neuronal norepinephrine
GO:0003111		positive regulation of heart rate by circulating epinephrine
GO:0003112		positive regulation of heart rate by neuronal epinephrine
GO:0003113		positive regulation of heart rate by neuronal norepinephrine
GO:0003114		positive regulation of heart rate by circulating norepinephrine
GO:0003115		regulation of vasoconstriction by epinephrine
GO:0003116		regulation of vasoconstriction by norepinephrine
GO:0003117		regulation of vasoconstriction by circulating norepinephrine
GO:0003118		regulation of vasoconstriction by neuronal norepinephrine
GO:0003119		regulation of vasoconstriction by neuronal epinephrine
GO:0003120		regulation of vasoconstriction by circulating epinephrine
GO:0003121		regulation of vasodilation by epinephrine
GO:0003122		regulation of vasodilation by norepinephrine
GO:0003123		regulation of vasodilation by circulating epinephrine
GO:0003124		regulation of vasodilation by neuronal epinephrine
GO:0003125		regulation of vasodilation by circulating norepinephrine
GO:0003126		regulation of vasodilation by neuronal norepinephrine
GO:0014917		positive regulation of diuresis by pressure natriuresis
GO:0014918		positive regulation of natriuresis by pressure natriuresis





-- 
Jennifer Deegan (nee Clark)
EMBL-European Bioinformatics Institute
Gene Ontology Consortium


-- 
Jennifer Deegan (nee Clark)
EMBL-European Bioinformatics Institute
Gene Ontology Consortium

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