Search Mailing List Archives
[Gofriends] Redundancy in go_XXXXXX-assocdb-tables/dbxref.txt
cherry at stanford.edu
Tue Sep 9 13:22:24 PDT 2008
There is a change coming to the format of the gene association file
which will solve this problem. Annotations to proteins, gene,
transcripts, etc for a particular locus will be identified as such.
The change should occur in 2009.
> From: "Quaid Morris" <quaid.morris at gmail.com>
> To: "Gabriel Berriz" <gberriz at hms.harvard.edu>
> Subject: Re: [Gofriends] Redundancy in go_XXXXXX-assocdb-tables/
> Cc: gofriends at genome.stanford.edu
> Hi Gabriel,
> It looks like in the example that you gave RGD ID 1302948 is a gene
> ID and
> ENSRNOP00000034933 is a protein ID. Are all your examples like
> this? Maybe
> there are circumstances when it's possible to annotate a specific
> and others when only the gene can be annotated.
More information about the go-friends