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[Gofriends] Redundancy in go_XXXXXX-assocdb-tables/dbxref.txt
Mike Cherry
cherry at stanford.edu
Tue Sep 9 13:22:24 PDT 2008
There is a change coming to the format of the gene association file
which will solve this problem. Annotations to proteins, gene,
transcripts, etc for a particular locus will be identified as such.
The change should occur in 2009.
-Mike
> From: "Quaid Morris" <quaid.morris at gmail.com>
> To: "Gabriel Berriz" <gberriz at hms.harvard.edu>
> Subject: Re: [Gofriends] Redundancy in go_XXXXXX-assocdb-tables/
> dbxref.txt
> Cc: gofriends at genome.stanford.edu
>
> Hi Gabriel,
>
> It looks like in the example that you gave RGD ID 1302948 is a gene
> ID and
> ENSRNOP00000034933 is a protein ID. Are all your examples like
> this? Maybe
> there are circumstances when it's possible to annotate a specific
> isoform
> and others when only the gene can be annotated.
>
> Q
>
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