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[Gofriends] Redundancy in go_XXXXXX-assocdb-tables/dbxref.txt

Mike Cherry cherry at stanford.edu
Tue Sep 9 13:22:24 PDT 2008


There is a change coming to the format of the gene association file  
which will solve this problem.  Annotations to proteins, gene,  
transcripts, etc for a particular locus will be identified as such.   
The change should occur in 2009.

-Mike


> From: "Quaid Morris" <quaid.morris at gmail.com>
> To: "Gabriel Berriz" <gberriz at hms.harvard.edu>
> Subject: Re: [Gofriends] Redundancy in go_XXXXXX-assocdb-tables/ 
> dbxref.txt
> Cc: gofriends at genome.stanford.edu
>
> Hi Gabriel,
>
> It looks like in the example that you gave RGD ID 1302948 is a gene  
> ID and
> ENSRNOP00000034933 is a protein ID.  Are all your examples like  
> this?  Maybe
> there are circumstances when it's possible to annotate a specific  
> isoform
> and others when only the gene can be annotated.
>
> Q
>



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