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[Gofriends] [Obo-discuss] file format: OBO to table convertion
Chris Mungall
cjm at berkeleybop.org
Wed Dec 9 14:49:34 PST 2009
Hi Zhiliang
You can use go-perl to convert obo files into flat denormalized tables.
There are a number of different relational schemas that support
ontologies encoded in obo format, including the GO database schema.
You can use go-db-perl to create a MySQL database with any obo file
loaded.
http://www.geneontology.org/GO.tools.software-libraries.shtml#go-perl
http://www.geneontology.org/GO.tools.software-libraries.shtml#go-db-perl
http://www.geneontology.org/GO.database.shtml
On Dec 9, 2009, at 1:00 PM, Zhiliang wrote:
> I searched but failed to find -- is there a tool to convert OBO
> files into
> a table-based (better yet, ready to load into MySQL in a GO
> structure)?
>
> Thanks,
> Zhiliang
>
>
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