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[Gofriends] GOA release [2009-10-08]
Tony Sawford
tonys at ebi.ac.uk
Thu Oct 8 01:04:17 PDT 2009
GOA releases: 08 October 2009
=============================
GOA (GO Annotation at EBI) is a project run by the European Bioinformatics
Institute that provides assignments of gene products to the Gene
Ontology (GO) resource.
The data can be obtained via:
EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/
EBI SRS: http://srs.ebi.ac.uk. Search GOA data library
GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/
GO CVS: http://www.geneontology.org/GO.CVS.help.html
For further information read: http://www.ebi.ac.uk/GOA or contact
goa at ebi.ac.uk.
Please note that the contents of the gene_association.goa_pdb file has
changed as of this release, as GOA is no longer able to provide
annotations to specific PDB chains. In future annotations in this file
will only associate PDB entries with GO terms. As an example, an
annotation line in the PDB file has changed from:
PDB 102M_A q_A GO:0005506 GOA:interpro IEA
InterPro:IPR000971 F protein_structure
taxon:9755 20090629 UniProtKB
to:
PDB 102M 102M GO:0005506 GOA:interpro IEA
InterPro:IPR000971 F protein_structure
taxon:9755 20091001 UniProtKB
Please contact us if this change is of concern.
Regards,
GOA Production
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