Search Mailing List Archives

Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[Gofriends] Need a software to map GO annotation

Mary Dolan Mary_Dolan at
Mon Sep 28 11:02:30 PDT 2009

Erika Feltrin <erika.feltrin at> writes:
>Currently I have a list of genes annotated to GO vocabularies and I
>would like to visualize these genes on the DAG GO structure like AmiGO
>The file has a column with the grape gene ID and a column with the GO
>I do not find any tool with this function. Does anybody know if there is
>a software that allows to map custom GO annotation of a non-consortium
>organism to the GO DAG graph?
Hi, Erika.
I have a simple prototype tool that does this:
I think it is self-explanatory (upload file, click "Search") but you will have to click the "Link to show select GO ids on DAG" link to get to the graph.
I hope this helps -- please let me know if you have any problem with it.


Mary E. Dolan, Ph.D.
Mouse Genome Informatics Consortium, The Jackson Laboratory
mdolan at

Research Faculty, NCGIA
Department of Spatial Information Science and Engineering, University of Maine
Boardman Hall 329
University of Maine
Orono, Maine 04469
fax: 207.581.2206
mary_dolan at

More information about the go-friends mailing list