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[Gofriends] Need a software to map GO annotation

Gavin Sherlock sherlock at genome.stanford.edu
Mon Sep 28 10:59:37 PDT 2009


Hi Erika,

GO::TermFinder (http://search.cpan.org/dist/GO-TermFinder/) has a  
module, called GO::View that allows creation of images (postscript or  
png) of subparts of the DAG annotated with genes.  Not sure if that's  
what you're looking for, but thought I'd mention it.

Cheers,
Gavin
________________________________________________________

Gavin Sherlock
Assistant Professor, Research
Dept. of Genetics
S201A, Grant Building,
Stanford University Medical School,
Stanford,
CA 94305-5120
Tel: 650 498 6012
Fax: 650 724 3701

http://genome-www.stanford.edu/~sherlock



On Sep 28, 2009, at 1:46 AM, Erika Feltrin wrote:

> Dear all,
>
> I am working on the grape annotation project and in particular on  
> the GO
> annotation of grape genes/proteins.
> Currently I have a list of genes annotated to GO vocabularies and I
> would like to visualize these genes on the DAG GO structure like AmiGO
> does.
> The file has a column with the grape gene ID and a column with the GO
> ID.
> I do not find any tool with this function. Does anybody know if  
> there is
> a software that allows to map custom GO annotation of a non-consortium
> organism to the GO DAG graph?
>
> Thanks
> Erika
>
>
> -- 
> ********************************
> Erika Feltrin, PhD
> Bioinformatics Lab
> CRIBI-Padua University
> Viale G. Colombo, 3
> 35121 Padova-Italy
>
> http://genomics.cribi.unipd.it
> Phone. +39. 049 827-6165
> Fax.   +39. 049 827-6159
> ********************************
>
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> Gofriends at geneontology.org
> http://fafner.stanford.edu/mailman/listinfo/gofriends




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