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[go-friends] Is there a standard format for GO term enrichment results?

Gavin Sherlock sherlock at genome.stanford.edu
Mon Aug 22 09:06:07 PDT 2011


Hi Chris,

If it's relatively trivial, I'd be happy to add whatever is decided upon to GO::TermFinder (which I need to make some updates to anyway).

Cheers,
Gavin

On Aug 17, 2011, at 11:10 AM, Chris Mungall wrote:

> Hi gofriends,
> 
> Within the GO consortium we are considering providing a unified interface to a number of heterogeneous term enrichment tools. In order to facilitate this we would need to have a standard output format and/or API for the tool results. I think the standardizing on a format would be easier than an API.
> 
> I asked this question on the biostar forum:
> 	http://biostar.stackexchange.com/questions/11269/is-there-a-standard-format-for-go-term-enrichment-results
> 
> But I thought I would also ask here, as I know a number of tool providers are subscribed.
> 
> Thanks
> Chris
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