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[go-friends] UniProtKB-GOA release [2011-08-24]

Tony Sawford tonys at ebi.ac.uk
Wed Aug 24 02:12:55 PDT 2011


UniProtKB-GOA release: 24 August 2011
=====================================

UniProtKB-GOA (UniProtKB GO Annotation at EBI) is a project run by the 
European Bioinformatics Institute that provides assignments of gene 
products to the Gene Ontology (GO) resource.

The data can be obtained via:

           EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/

           EBI SRS: http://srs.ebi.ac.uk. Search GOA data library

           GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/

           GO CVS: http://www.geneontology.org/GO.CVS.help.html

For further information read: http://www.ebi.ac.uk/GOA or contact
goa at ebi.ac.uk.

Latest News
===========

In this release, the UniProt GO annotation files contain a greatly 
reduced number of protein binding GO annotations from the IntAct 
database. A subset of presumed reliable interactions is now extracted 
from the IntAct dataset with export determined using a simple scoring 
system developed by IntAct, coupled to a score threshold that has been 
deliberately chosen to exclude interactions supported by only one 
experimental observation. Further details of how interactions are scored 
can be found at the IntAct website 
(http://www.ebi.ac.uk/intact/pages/faq/faq.xhtml#4). This simple 
score-based filter is be used in combination with a set of defined rules 
that excludes certain types of data, such as interactions that have been 
inferred but not experimentally proven.


Regards,
UniProtKB-GOA Production



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