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[go-friends] New GO annotation pipeline for plant proteins

Rachael Huntley huntley at ebi.ac.uk
Wed Aug 31 06:06:35 PDT 2011


UniProtKB-GOA are pleased to announce the inclusion in their database of 
electronic GO annotations created by EnsemblPlants/Gramene 
<http://plants.ensembl.org/> (http://plants.ensembl.org/).

The annotations are created by projection of GO annotations from 
/Arabidopsis thaliana/ or /Oryza sativa/ proteins onto proteins from one 
or more target species based on gene orthology obtained from Ensembl 
Compara.

This first release contains almost 230,000 annotations to over 50,000 
proteins covering 16 taxonomies including; poplar, maize, sorghum, grape 
and Physcomitrella. We hope this will be a valuable resource for the 
non-model plant species community.

The annotations can be viewed and downloaded from the QuickGO browser 
_here 
<http://www.ebi.ac.uk/QuickGO/GAnnotation?a=&termUse=ancestor&relType=IPO%3D&customRelType=IPOR%2B-%3F%3D&ref=GO_REF%3A0000035>_ 

(http://www.ebi.ac.uk/QuickGO/GAnnotation?a=&termUse=ancestor&relType=IPO%3D&customRelType=IPOR%2B-%3F%3D&ref=GO_REF%3A0000035)

Any queries regarding these annotations should be directed to goa at ebi.ac.uk

Regards,
UniProtKB-GOA


UniProtKB-GOA is a project run by the European Bioinformatics Institute 
that provides assignments of gene products to the Gene Ontology (GO) 
resource.

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