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[go-friends] GO enrichment analysis - IDs not in database

Stefan Götz sgoetz at
Thu Jun 28 09:29:21 PDT 2012

with Blast2GO you can simply upload your GO term assignments (a table with
ID <tab> GO, one per row, extension: .annot) and than perform a enrichment
analysis (Menu -> Analysis -> Enrichment) providing a test and reference
set (list of your IDs, plain txt file, one id per row). Start Blast2GO from
here: (you need Java installed).
Best regards,

On 28 June 2012 17:48, Paola Roncaglia <paola at> wrote:

> Hello,
> We have a GO user (cc'd on this email) who would like to perform GO term
> enrichment analysis on a newly sequenced species, from in-house microarray
> results. The genomic data is public (released by DOE-JGI), but not
> available from a public database yet, therefore the gene product IDs are
> not recognized by e.g. AmiGO's enrichment tool. The user has a list of IDs
> of differentially expressed transcript, and a table provided by the
> sequencing lab that contains all transcript IDs and automatically-generated
> GO term assignments. Could anyone please recommend a tool?
> The latest email on this subject (containing most of the pertaining
> GO-help correspondence, bottom to top) is here:
> June/005212.html<>
> Many thanks,
> Paola Roncaglia
> --
> Dr Paola Roncaglia
> GO Editorial Office
> Wellcome Trust Genome Campus
> Hinxton
> Cambridgeshire, UK
> CB10 1SD
> p: +44 1223 492600
> f: +44 1223 494468
> ______________________________**_________________
> go-friends mailing list
> go-friends at
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