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[go-friends] Shared GO terms between protein pairs

Francisco Couto fcouto at
Thu Mar 22 03:40:50 PDT 2012

you can use
First use the query "find assigned GO terms" and copy&paste the proteins
acc into the input box,
then select the GO terms you want  and use the query "find shared ancestor

Francisco Couto

On 22 March 2012 10:23, Jane Lomax <jane at> wrote:

> Could anyone recommend a tool for this user please?
> thanks,
> Jane
>> Respected Sir/Madam,
>> I am currently working on a task that requires me to assess the shared GO
>> terms between protein pairs. I have 30,000 protein pairs (PPI data) and I
>> would like to determine the depth/level in the GO hierarchy that each
>> protein pair shares. I am unable to determine which GO tool/software is
>> suitable for this task. Could you please suggest what method I could employ
>> to achieve this goal.
>> Your support and response in this matter shall be highly appreciated.
>> Thanking you.
>> Sincerely,
>> Saloni
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