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[go-friends] question regarding gene_association files

Rachael Huntley huntley at ebi.ac.uk
Mon May 20 01:08:23 PDT 2013


Hi Iddo,

The UniProt file contains annotations for all proteins that have GO 
annotations in UniProtKB.
The human file is a subset of these annotations based on the UniProt 
complete proteome for human and so has annotations to a reduced set of 
accessions. It is also filtered for redundant annotations.

Let me know if you have further questions.

Rachael.


On 17/05/2013 20:33, Iddo Friedberg wrote:
>
> I am looking at two files: Hi,
>
> I am looking at two files: gene_association.goa_uniprot and 
> gene_assocaition.goa_human
>
> Apparently, there are some proteins in gene_association.goa_uniprot 
> that are designated as human by the Taxon_ID field, yet do not appear 
> in the goa_human file.
>
> Can someone tell me why that is? Here are some examples:
>
> A0A2G2
> A0A2G3
>  A0A2G4
>  A0A2G5
>  A0A2G6
>  A0A2G8
>  A0A2G9
>  A0A4R5
>  A0A4Z1
>  A0A502
> A0A2G2
>
> Thanks,
>
> Iddo
>
> -- 
> Iddo Friedberg
> http://iddo-friedberg.net/contact.html
> ++++++++++[>+++>++++++>++++++++>++++++++++>+++++++++++<<<<<-]>>>>++++.>
> ++++++..----.<<<<++++++++++++++++++++++++++++.-----------..>>>+.-----.
> .>-.<<<<--.>>>++.>+++.<+++.----.-.<++++++++++++++++++.>+.>.<++.<<<+.>>
> >>----.<--.>++++++.<<<<------------------------------------.
>
>
> _______________________________________________
> go-friends mailing list
> go-friends at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/go-friends


-- 
Project Leader
UniProt - Gene Ontology Annotation Project
European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton
Cambridge, CB10 1SD
UK

Email: huntley at ebi.ac.uk
UniProt Gene Ontology Annotation Project: http://www.ebi.ac.uk/GOA
http://twitter.com/emblebi

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