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[go-friends] UniProt-GOA release [2013-05-30]

Tony Sawford tonys at ebi.ac.uk
Thu May 30 00:28:51 PDT 2013


UniProt-GOA release: 30 May 2013
================================

UniProt-GOA (UniProt GO Annotation) is a project run by the UniProt
group that provides assignments of gene products to the Gene Ontology
(GO) resource.

The data can be obtained via:

          EBI FTP: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/

          EBI SRS: http://srs.ebi.ac.uk. Search GOA data library

          GO FTP: ftp://ftp.geneontology.org/pub/go/gene-associations/

          GO SVN: http://www.geneontology.org/GO.svn.help.shtml

For further information read: http://www.ebi.ac.uk/GOA or contact
goa at ebi.ac.uk.

Latest News
===========

UniProt-GOA are pleased to announce the release of a set of
species-specific annotation files that are based on UniProt reference
proteomes that provide one protein per gene. The protein accessions
included in these files are the protein sequences annotated in
Swiss-Prot or the longest TrEMBL transcript if there is no Swiss-Prot
record.

The files are released in both GAF2.0 and GPAD format and there is an
accompanying Gene Product Information file, which contains additional
information on all the protein accessions in the species' reference
proteome.

The files can be identified by the inclusion of "ref" in the file name,
e.g. gp_association.goa_ref_human or gene_association.goa_ref_mouse and
can be downloaded from the UniProt-GOA ftp site
(ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/).

Further details on the file formats can be obtained from the readme in
each species directory.

Regards,
UniProt-GOA Production


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