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[go-friends] Reactome Announcement: New Reactome Pathway Analysis Portal Released

Robin Haw Robin.Haw at oicr.on.ca
Mon Jun 30 09:51:38 PDT 2014


Pathway databases, like Reactome, are uniquely suited for interpreting the results of high-throughput functional genomics data sets such as microarray-based expression profiles, protein interaction sets, and chromatin IP. In response to user feedback and new feature requests, we have released a new Reactome Pathway Browser<http://www.reactome.org/PathwayBrowser/> with an integrated suite of tools for pathway analysis. Using these improved features, you can map protein lists to Reactome pathways, perform pathway overrepresentation analysis for a set of genes, colourize pathway diagrams with gene expression data, and compare model organism and human pathways. To support third-party tool integration, the Reactome Pathway Analysis Portal<http://www.reactome.org/PathwayBrowser/#TOOL=AT> is also available via RESTful web services<http://www.reactome.org/AnalysisService/index.html>. Further details about the new pathway analysis tool can be found in our User Guide<http://wiki.reactome.org/index.php/Usersguide>.

Reactome is a collaboration between groups at the Ontario Institute for Cancer Research, Cold Spring Harbor Laboratory, New York University Medical Center, and The European Bioinformatics Institute. Freely available to everyone worldwide, the Reactome database offers pathway data encapsulating areas of human biology ranging from metabolism to complex events such as FGFR signaling, apoptosis and disease, extracted from the published literature by Reactome curatorial staff and cross-referenced to a wide range of standard biological databases. Reactome data and software are distributed under the terms of the Creative Commons Attribution 3.0 Unported License.

For more information contact:
Robin Haw
Email: help [at] reactome.org
Tel: 647-260-7985
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