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[go-friends] Reactome Announcement: Edges/ connections between pathways

Balaji balajior at
Tue May 20 05:21:51 PDT 2014

Dear Robin,
Thank you for your reply.
Do you know the Mysql command to extract the same hierarchy for Human as seen in the link below

Thank you,

On Friday, 16 May 2014 7:06 AM, Robin Haw <Robin.Haw at> wrote:

Dear Balaji,
You might want to try our restful services to help answer your questions - 

From: Balaji <balajior at>
Reply-To: Balaji <balajior at>
Date: Thursday, May 15, 2014 at 11:36 AM
To: "reactome-announce at" <reactome-announce at>
Subject: Edges/ connections between pathways


I would like to extract all the pathways in an organism. In each pathway I want all the genes involved and further identify total number of connections between the pathways.
I know how to extract all the pathways and genes associated with it using Mysql or biomaRt in R.
I am unable to figure out the latter part which is to identify pathway connections 
for eg. in KEGG as example
Glycolysis : TCA cycle : 1,1
In KEGG there is one outward and one inward connection, i would like to identify such connections between reactome pathways.
Thank you,
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