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[go-friends] Obsoletion notice: precomposed terms with pattern 'regulation of process by transcription (or regulation of transcription)

Pascale Gaudet pascale.gaudet at sib.swiss
Wed Aug 21 05:41:42 PDT 2019


Dear all, 

The proposal has been made to obsolete the following pre-composed terms: 

GO:0100052 negative regulation of G1/S transition of mitotic cell cycle by transcription from RNA polymerase II promoter
GO:0100017 negative regulation of cell-cell adhesion by transcription from RNA polymerase II promoter
GO:0100025 negative regulation of cellular amino acid biosynthetic process by transcription from RNA polymerase II promoter
GO:0100044 negative regulation of cellular hyperosmotic salinity response by transcription from RNA polymerase II promoter
GO:0100043 negative regulation of cellular response to alkaline pH by transcription from RNA polymerase II promoter
GO:0100007 negative regulation of ceramide biosynthetic process by transcription from RNA polymerase II promoter
GO:0100064 negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter
GO:0100040 negative regulation of invasive growth in response to glucose limitation by transcription from RNA polymerase II promoter
GO:0100050 negative regulation of mating type switching by transcription from RNA polymerase II promoter
GO:0100069 negative regulation of neuron apoptotic process by transcription from RNA polymerase II promoter
GO:0100049 negative regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter
GO:0100042 negative regulation of pseudohyphal growth by transcription from RNA polymerase II promoter
GO:0100046 positive regulation of arginine biosynthetic process by transcription from RNA polymerase II promoter
GO:0100037 positive regulation of cellular alcohol catabolic process by transcription from RNA polymerase II promoter
GO:1900422 positive regulation of cellular alcohol catabolic process by positive regulation of transcription from RNA polymerase II promoter
GO:1900392 regulation of transport by negative regulation of transcription from RNA polymerase II promoter
GO:0100005 positive regulation of ethanol catabolic process by transcription from RNA polymerase II promoter
GO:0100013 positive regulation of fatty acid beta-oxidation by transcription from RNA polymerase II promoter
GO:1904741 positive regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter
GO:0100004 positive regulation of peroxisome organization by transcription from RNA polymerase II promoter
GO:0100032 positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter
GO:0100048 positive regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter
GO:0100055 positive regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter
GO:0100041 positive regulation of pseudohyphal growth by transcription from RNA polymerase II promoter
GO:0100068 positive regulation of pyrimidine-containing compound salvage by transcription from RNA polymerase II promoter
GO:1904001 positive regulation of pyrimidine-containing compound salvage by positive regulation of transcription from RNA polymerase II promoter
GO:0100053 positive regulation of sulfate assimilation by transcription from RNA polymerase II promoter
GO:0100024 regulation of carbohydrate metabolic process by transcription from RNA polymerase II promoter
GO:0100047 negative regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter
GO:0100015 positive regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter
GO:0100034 regulation of 4,6-pyruvylated galactose residue biosynthetic process by transcription from RNA polymerase II promoter 
GO:1900416 regulation of 4,6-pyruvylated galactose residue biosynthetic process by regulation of transcription from RNA polymerase II promoter 
GO:0100038 regulation of cellular response to oxidative stress by transcription from RNA polymerase II promoter
GO:1900427 regulation of cellular response to oxidative stress by regulation of transcription from RNA polymerase II promoter 
GO:0100028 regulation of conjugation with cellular fusion by transcription from RNA polymerase II promoter
GO:0100066 negative regulation of induction of conjugation with cellular fusion by transcription from RNA polymerase II promoter
GO:0100033 regulation of fungal-type cell wall biogenesis by transcription from RNA polymerase II promoter
GO:1900415 regulation of fungal-type cell wall biogenesis by regulation of transcription from RNA polymerase II promoter
GO:0100051 regulation of meiotic nuclear division by transcription from RNA polymerase II promoter
GO:0100051 positive regulation of meiotic nuclear division by transcription from RNA polymerase II promoter
GO:0100057 regulation of phenotypic switching by transcription from RNA polymerase II promoter
GO:0100059 negative regulation of phenotypic switching by transcription from RNA polymerase II promoter
GO:0100058 positive regulation of phenotypic switching by transcription from RNA polymerase II promoter
GO:0100039 regulation of pyrimidine nucleotide biosynthetic process by transcription from RNA polymerase II promoter
GO:1900448 regulation of pyrimidine nucleotide biosynthetic process by positive regulation of transcription from RNA polymerase II promoter 
GO:0100016 regulation of thiamine biosynthetic process by transcription from RNA polymerase II promoter
GO:1900382 regulation of thiamine biosynthetic process by regulation of transcription from RNA polymerase II promoter 
GO:0100065 negative regulation of leucine import by transcription from RNA polymerase II promoter
GO:1902574 negative regulation of leucine import by regulation of transcription from RNA polymerase II promoter 
GO:0100003 positive regulation of sodium ion transport by transcription from RNA polymerase II promoter
GO:0100006 positive regulation of sulfite transport by transcription from RNA polymerase II promoter
GO:0100018 regulation of glucose import by transcription from RNA polymerase II promoter
GO:1900389 regulation of glucose import by regulation of transcription from RNA polymerase II promoter
GO:0100021 regulation of iron ion transport by transcription from RNA polymerase II promoter

The reason for obsoletion is that these should be captured as GO-CAM models. 


There are 0 experimental annotations to those terms. 
There are 0 InterPro2GO mappings to those term. 
Those terms are not included in any subset(s).
 

Any comments can be added to the issue: https://github.com/geneontology/go-ontology/issues/12739
 
We are opening a comment period for this proposed obsoletion. We’d like to proceed and obsolete this term on August 23rd. Unless objections are received by August 23rd, we will assume that you agree to this change. 

Thanks, Pascale


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