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[go-friends] Searching with AND

Valerie Wood vw253 at cam.ac.uk
Thu Jun 18 10:30:49 PDT 2020


Hi Ed,

Term Matrix tool will do this for you
http://amigo.geneontology.org/matrix

Best,

Val



On 18/06/2020 17:55, Ed Siefker wrote:
> This seems like a very simple thing, but I haven't been able to figure
> out how to do it.
>
> I want a list of gene products that match both GO:0070403 AND GO:0004745.
>
> I've tried QuickGO, and it gives me a list of gene products that match
> GO:0070403 OR GO:0004745.  I can't find any way to make it give me the
> intersection of these sets.
>
> I've tried AmiGO, and each individual GO term gives me appropriate
> gene products.  When I provide both GO terms, it gives me a list of
> gene products that match neither.   Why does it return Dopamine
> Receptors, when I'm searching for retinol dehydrogenase activity and
> NAD+ binding?
>
> This is pretty confusing, am I using the wrong tools?  Thanks
> -Ed
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-- 
University of Cambridge
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Cambridge Systems Biology Centre http://www.sysbiol.cam.ac.uk/Investigators/val-wood



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