Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[go-friends] Searching with AND

Chris Mungall cjmungall at lbl.gov
Thu Jun 18 11:03:19 PDT 2020


You can also use search templates:
http://amigo.geneontology.org/grebe

[image: image.png]

Once you have selected the gene pair you will be taken to amigo where you
can drill down e.g. by species

The term matrix is more powerful as you can see co-annotation grids for
arbitrary sets of terms, but the templates may also provide other canned
queries of interest.

On Thu, Jun 18, 2020 at 10:31 AM Valerie Wood <vw253 at cam.ac.uk> wrote:

> Hi Ed,
>
> Term Matrix tool will do this for you
> http://amigo.geneontology.org/matrix
>
> Best,
>
> Val
>
>
>
> On 18/06/2020 17:55, Ed Siefker wrote:
> > This seems like a very simple thing, but I haven't been able to figure
> > out how to do it.
> >
> > I want a list of gene products that match both GO:0070403 AND GO:0004745.
> >
> > I've tried QuickGO, and it gives me a list of gene products that match
> > GO:0070403 OR GO:0004745.  I can't find any way to make it give me the
> > intersection of these sets.
> >
> > I've tried AmiGO, and each individual GO term gives me appropriate
> > gene products.  When I provide both GO terms, it gives me a list of
> > gene products that match neither.   Why does it return Dopamine
> > Receptors, when I'm searching for retinol dehydrogenase activity and
> > NAD+ binding?
> >
> > This is pretty confusing, am I using the wrong tools?  Thanks
> > -Ed
> > _______________________________________________
> > go-friends mailing list
> > go-friends at lists.stanford.edu
> > https://mailman.stanford.edu/mailman/listinfo/go-friends
>
>
> --
> University of Cambridge
> PomBase http://www.pombase.org/
> Cambridge Systems Biology Centre
> http://www.sysbiol.cam.ac.uk/Investigators/val-wood
>
> _______________________________________________
> go-friends mailing list
> go-friends at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/go-friends
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/go-friends/attachments/20200618/d00138b3/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image.png
Type: image/png
Size: 12024 bytes
Desc: not available
URL: <http://mailman.stanford.edu/pipermail/go-friends/attachments/20200618/d00138b3/attachment-0001.png>


More information about the go-friends mailing list