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[go-friends] Obsoletion notice: terms for synthesis of secondary metabolite intermediates

Pascale Gaudet Pascale.Gaudet at sib.swiss
Thu Dec 16 05:46:18 PST 2021


Dear all,

The proposal has been made to obsolete the following terms, that refer to intermediates of biosynthetic pathway, not the end product.

* GO:1900566 ‘chanoclavine-I biosynthetic process’
** consider GO:1900809 ‘fumigaclavine C biosynthetic process’
* GO:1900778 'fumiquinazoline A biosynthetic process'
** consider: GO:1900781 'fumiquinazoline C biosynthetic process'
* GO:1900805 'brevianamide F biosynthetic process'
** consider: GO:1900772 'fumitremorgin B biosynthetic process'
* GO:0140653 'fumitremorgin C biosynthetic process'
** consider: GO:1900772 'fumitremorgin B biosynthetic process'


as well as the corresponding 'metabolic', 'catabolic' and 'regulation' terms: No annotations except GO:1900803 brevianamide F metabolic process

GO:1900564 chanoclavine-I metabolic process
GO:1900565 chanoclavine-I catabolic process
GO:1900644 negative regulation of chanoclavine-I biosynthetic process
GO:1900645 positive regulation of chanoclavine-I biosynthetic process
GO:1900643 regulation of chanoclavine-I biosynthetic process

GO:1900776 fumiquinazoline A metabolic process
GO:1900777 fumiquinazoline A catabolic process
(has no regulation terms)

GO:1900803 brevianamide F metabolic process -> 1 EXP (AspGD)- > annotate to the MF prenyltransferase activity (or a more specific child?)
GO:1900804 brevianamide F catabolic process

GO:1900859 negative regulation of brevianamide F biosynthetic process
GO:1900860 positive regulation of brevianamide F biosynthetic process
GO:1900858 regulation of brevianamide F biosynthetic process


You may comment on the ticket: https://github.com/geneontology/go-ontology/issues/22542

Thanks, Pascale


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