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[go-friends] Obsoletion notice: precomposed terms using GO:0046019 regulation of transcription from RNA polymerase II + a developmental term

Pascale Gaudet Pascale.Gaudet at sib.swiss
Thu Feb 3 09:21:14 PST 2022


Dear all,


The proposal has been made to obsolete the precomposed terms under GO:0046019 regulation of transcription from RNA polymerase II]). Few terms are left ; this next list focuses on term precomposed with a developmental term:

Precomposed with heart development:
* GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development: 0 EXP
* [GO:1901227 negative regulation of transcription from RNA polymerase II promoter involved in heart development](http://amigo.geneontology.org/amigo/term/GO:1901227#display-lineage-tab): 1 EXP
* [GO:1901228 positive regulation of transcription from RNA polymerase II promoter involved in heart development](http://amigo.geneontology.org/amigo/term/GO:1901228#display-lineage-tab): 3 EXP
* [GO:0003258 regulation of transcription from RNA polymerase II promoter involved in endocardial precursor cell differentiation](http://amigo.geneontology.org/amigo/term/GO:0003258#display-lineage-tab): 0 annot
* [GO:0003256 regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation](http://amigo.geneontology.org/amigo/term/GO:0003256#display-lineage-tab): 3 EXP
* GO:0003257 positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation: 6 EXP
* 13 BHF @RLovering


Precomposed with kidney development:
* GO:0060994 regulation of transcription from RNA polymerase II promoter involved in kidney development: 1 EXP
* [GO:0061216 regulation of transcription from RNA polymerase II promoter involved in mesonephros development](http://amigo.geneontology.org/amigo/term/GO:0061216#display-lineage-tab): 0
* [GO:0072212 regulation of transcription from RNA polymerase II promoter involved in metanephros development](http://amigo.geneontology.org/amigo/term/GO:0072212#display-lineage-tab): 0
* 1 MGI @hdrabkin

Precomposed with spermatogenesis
* GO:1902064 regulation of transcription from RNA polymerase II promoter involved in spermatogenesis
4 EXP
* 1 UniProt (changed)
* 1 WB @vanaukenk
* 2 FB @hattrill
These should be annotated with extensions or as GO-CAM models.

Annotations are here: https://docs.google.com/spreadsheets/d/1v4Vs1zHiySAMqEUEmiF2uuRfTDRZmET52mokg8Qp3oA/edit#gid=0


You can comment here: https://github.com/geneontology/go-ontology/issues/12739#issuecomment-1029217618

We'd like to obsolete these terms by February 10th.


Thanks, Pascale

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