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[Gohelp] GOOSE SQL query

Amelia Ireland aji at ebi.ac.uk
Fri Aug 1 10:13:27 PDT 2008


Dear Pegah Tavakolkhah,

> I have one more question. I have read in the description of some GOs
> that they are involved in apoptosis or angiogenesis (which are the main
> reasons of cancer). I wanted to know if apoptosis or angiogenesis are GO
> themselves. And if they are, would their descendant GOs show the GOs
> which are responsible for these two processes?

If you do a search for terms either using GOOSE or using AmiGO 
(http://amigo.geneontology.org/), you can find the GO terms apoptosis 
(GO:0006915; 
http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:0006915) 
and angiogenesis (GO:0001525; 
http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:0001525). 
You can find the gene products that have been associated with these 
processes (and the more specific child processes), either by choosing the 
gene product associations link in AmiGO, or by using GOOSE to query the GO 
database.

I hope that is helpful; if you have any more questions, please 
don't hesitate to contact the GO Helpdesk again.

Kind regards,
Amelia Ireland, GO Helpdesk

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