[go-helpdesk] Amigo graphical display

[David Hill]

Dear Dr. McGreevy,

Thank you for contacting the GO Consortium. Ramigo is not a tool that is
provided by the GO Consortium. However if the graphical representation it
uses is the same as the ontology representation in the GO AmiGO tool's
Graphical View, then the lines between the terms refer to the following
relationships.

Dark blue= is_a
Black= regulates
Red= negatively_regulates
Green= positively_regulates
Light Blue= part_of

Sincerely,

David Hill



On 6/1/12 8:49 AM, "mcgreevj at tcd.ie" <mcgreevj at tcd.ie> wrote:

>
>Email: mcgreevj at tcd.ie
>Name: Software (from Jonah McGreevy)
>Text: I created GO trees using the RamiGO package for R. The lines in the
>trees are green, red or blue. I have been unable to confirm though
>documentation that the green refers to enhanving, the red to suppression
>and the blue to neither. Can you please confirm this or point me to the
>appropriate documentation to read. The RamiGo documentation folder link
>is dead. 


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