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[go-helpdesk] Amigo graphical display

David Hill David.Hill at
Tue Jun 5 05:59:50 PDT 2012

Dear Dr. McGreevy,

Thank you for contacting the GO Consortium. Ramigo is not a tool that is
provided by the GO Consortium. However if the graphical representation it
uses is the same as the ontology representation in the GO AmiGO tool's
Graphical View, then the lines between the terms refer to the following

Dark blue= is_a
Black= regulates
Red= negatively_regulates
Green= positively_regulates
Light Blue= part_of


David Hill

On 6/1/12 8:49 AM, "mcgreevj at" <mcgreevj at> wrote:

>Email: mcgreevj at
>Name: Software (from Jonah McGreevy)
>Text: I created GO trees using the RamiGO package for R. The lines in the
>trees are green, red or blue. I have been unable to confirm though
>documentation that the green refers to enhanving, the red to suppression
>and the blue to neither. Can you please confirm this or point me to the
>appropriate documentation to read. The RamiGo documentation folder link
>is dead. 

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