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[go-helpdesk] Plant GO Slim categories

Tanya Berardini tberardi at acoma.stanford.edu
Wed Jun 20 13:36:42 PDT 2012


Hi Katrien,

I've attached an Excel file of the goslim list with the following columns:

1. term name
2. GO id
3. aspect (biological process, cellular component, or molecular function)

Best wishes,

Tanya



Tanya Berardini
TAIR Curator
www.arabidopsis.org


On Wed, Jun 20, 2012 at 4:48 AM, Katrien Vandepitte <
Katrien.Vandepitte at bio.kuleuven.be> wrote:

>  Hi Tanya,****
>
> Thank for the quick reply. I`m not familiar with an obo format  so if you
> could send me a simple list in any other format that would be great. ****
>
> ** **
>
> Kind Regards,****
>
> Katrien****
>
> ** **
>
> ** **
>
> *From:* tberardi at arabidopsis.org [mailto:tberardi at arabidopsis.org] *On
> Behalf Of *Tanya Berardini
> *Sent:* Wednesday, June 20, 2012 1:03 AM
> *To:* Susan Tweedie
> *Cc:* Katrien Vandepitte; gohelp at geneontology.org
> *Subject:* Re: Plant GO Slim categories****
>
> ** **
>
> Hi Katrien,
>
> The file in the URL that Susan sent you should contain all the information
> that you need.  It can also be condensed to be just a simple list of
> terms.   Please let us know if you need help in doing that or if you
> require some other format.
>
> Best wishes,
>
>
> Tanya Berardini
> TAIR Curator
> www.arabidopsis.org
>
> ****
>
> On Tue, Jun 19, 2012 at 4:53 AM, Susan Tweedie <sart2 at gen.cam.ac.uk>
> wrote:****
>
> Dear Katrien****
>
> ** **
>
> Thank you for contacting the GO Consortium with your question. ****
>
> ** **
>
> The GO consortium Plant GO slim can be downloaded from our website:****
>
> http://www.geneontology.org/GO_slims/goslim_plant.obo****
>
> ** **
>
>
> This file is in obo format which contains full term details for each term entry but could be used to generate a simple list. I am cc'ing Tanya Beradini from TAIR in case she is aware of other formats of this information.
> ****
>
> ** **
>
> Please get back to us if you have further questions.****
>
> ** **
>
> Best wishes,****
>
> ** **
>
> Susan Tweedie****
>
> ** **
>
> FlyBase GO curator****
>
> ** **
>
> On 19 Jun 2012, at 19/Jun/2012 10:04:43,
> go-helpdesk-bounces at lists.stanford.edu wrote:****
>
>
>
> ****
>
> ** **
>
> *From: *katrien.vandepitte at bio.kuleuven.be****
>
> *Date: *18 June 2012 20:41:12 BST****
>
> *To: *go-helpdesk at mailman.stanford.edu****
>
> *Subject: **GO Help query (from website)*****
>
>
>
>
> Email: katrien.vandepitte at bio.kuleuven.be
> Name: Ontology (from Vandepitte)
> Text: Dear,
> Where can I find a list of all possible Plant GO Slim categories?
> Kind Regards
>
> ****
>
> ** **
>
> ** **
>
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