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[go-helpdesk] Fwd: Plant GO Slim categories

Tanya Berardini tberardi at acoma.stanford.edu
Wed Jun 20 14:01:49 PDT 2012


for archive



---------- Forwarded message ----------
From: Katrien Vandepitte <Katrien.Vandepitte at bio.kuleuven.be>
Date: Wed, Jun 20, 2012 at 1:39 PM
Subject: RE: Plant GO Slim categories
To: Tanya Berardini <tberardi at acoma.stanford.edu>


 Hi Tanya, ****

Thank you very much! This is exactly what I was looking for.****

** **

Best, Katrien****

*From:* tberardi at arabidopsis.org [mailto:tberardi at arabidopsis.org] *On
Behalf Of *Tanya Berardini
*Sent:* Wednesday, June 20, 2012 10:37 PM
*To:* Katrien Vandepitte
*Cc:* gohelp

*Subject:* Re: Plant GO Slim categories****

 ** **

Hi Katrien,

I've attached an Excel file of the goslim list with the following columns:

1. term name
2. GO id
3. aspect (biological process, cellular component, or molecular function)

Best wishes,

Tanya



Tanya Berardini
TAIR Curator
www.arabidopsis.org

****

On Wed, Jun 20, 2012 at 4:48 AM, Katrien Vandepitte <
Katrien.Vandepitte at bio.kuleuven.be> wrote:****

Hi Tanya,****

Thank for the quick reply. I`m not familiar with an obo format  so if you
could send me a simple list in any other format that would be great. ****

 ****

Kind Regards,****

Katrien****

 ****

 ****

*From:* tberardi at arabidopsis.org [mailto:tberardi at arabidopsis.org] *On
Behalf Of *Tanya Berardini
*Sent:* Wednesday, June 20, 2012 1:03 AM
*To:* Susan Tweedie
*Cc:* Katrien Vandepitte; gohelp at geneontology.org
*Subject:* Re: Plant GO Slim categories****

 ****

Hi Katrien,

The file in the URL that Susan sent you should contain all the information
that you need.  It can also be condensed to be just a simple list of
terms.   Please let us know if you need help in doing that or if you
require some other format.

Best wishes,


Tanya Berardini
TAIR Curator
www.arabidopsis.org****

On Tue, Jun 19, 2012 at 4:53 AM, Susan Tweedie <sart2 at gen.cam.ac.uk> wrote:*
***

Dear Katrien****

 ****

Thank you for contacting the GO Consortium with your question. ****

 ****

The GO consortium Plant GO slim can be downloaded from our website:****

http://www.geneontology.org/GO_slims/goslim_plant.obo****

 ****

This file is in obo format which contains full term details for each
term entry but could be used to generate a simple list. I am cc'ing
Tanya Beradini from TAIR in case she is aware of other formats of this
information.
****

 ****

Please get back to us if you have further questions.****

 ****

Best wishes,****

 ****

Susan Tweedie****

 ****

FlyBase GO curator****

 ****

On 19 Jun 2012, at 19/Jun/2012 10:04:43,
go-helpdesk-bounces at lists.stanford.edu wrote:****

** **

 ****

*From: *katrien.vandepitte at bio.kuleuven.be****

*Date: *18 June 2012 20:41:12 BST****

*To: *go-helpdesk at mailman.stanford.edu****

*Subject: **GO Help query (from website)*****




Email: katrien.vandepitte at bio.kuleuven.be
Name: Ontology (from Vandepitte)
Text: Dear,
Where can I find a list of all possible Plant GO Slim categories?
Kind Regards****

 ****

 ****

** **
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