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[go-helpdesk] SimCT Tool submission

Paola Roncaglia paola at ebi.ac.uk
Tue Jun 26 09:01:44 PDT 2012


SimCT Tool submission

name: SimCT
url:http://tagc.univ-mrs.fr/SimCT
organization: TAGC - Inserm
organizationurl:http://tagc.univ-mrs.fr
contactname: Carl Herrmann
contactemail:carl.herrmann at univ-amu.fr
tool_type: browser
tool_type: visualization
tool_type: term_enrichment
tool_type: functional_similarity
tool_type: semantic_similarity
description: SimCT is a web-based tool which allows to graphically display the relationships between biological objects (e.g. genes or proteins) based on their annotations to a biomedical ontology. The result is presented as a tree of these objects, which can be viewed and explored through a specific java applet designed to highlight relevant features. SimCT draws a simplified representation of biological terms present in the set of objects, and can be applied to any ontology for which annotation data is available.
license: free_academic
open_source: true
platform: web
publications: PMID:19776214
go_data: term
go_data: def
go_data: syn
go_data: rel
go_data: gp
go_data: ev_code
go_data: qual
go_data_src: obo
go_data_src: gaf
go_data_src_other: NCBI
update_frequency: no_fixed
submission_date: 2012-06-26 10:06:45

-- 
Dr Paola Roncaglia
GO Editorial Office
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridgeshire, UK
CB10 1SD
p: +44 1223 492600
f: +44 1223 494468



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