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[go-helpdesk] [POSSIBLE VIRUS:###] Fwd: Re: [go-friends] GO enrichment analysis - IDs not in database

Paola Roncaglia paola at ebi.ac.uk
Thu Jun 28 09:10:48 PDT 2012


Dear Maurice,

Thank you for your prompt suggestion. I'm cc-ing the user (with his 
correct email address this time) so he may explore your suggestion and 
get in touch with you directly if needed.

Best regards,
Paola Roncaglia

-------- Original Message --------
Subject: 	Re: [go-friends] GO enrichment analysis - IDs not in database
Date: 	Thu, 28 Jun 2012 10:52:11 -0500
From: 	Maurice Ling <mauriceling at gmail.com>
Reply-To: 	mauriceling at acm.org
To: 	Paola Roncaglia <paola at ebi.ac.uk>



Dear Paola

I wrote a script to process the GO-mapping raw files before which may be 
of help to you - 
http://ojs.pythonpapers.org/index.php/tppsc/article/view/234.
Attached is my manuscript and files.

Please kindly let me know.

Maurice LING
mobile: +1(605)5920300, +6596669233
www: http://maurice.vodien.com
CV: http://maurice.vodien.com/maurice_resume.pdf
Linkedin: http://www.linkedin.com/in/mauriceling
ResearchGate: https://www.researchgate.net/profile/Maurice_HT_Ling


On Thu, Jun 28, 2012 at 10:48 AM, Paola Roncaglia <paola at ebi.ac.uk 
<mailto:paola at ebi.ac.uk>> wrote:

    Hello,

    We have a GO user (cc'd on this email) who would like to perform GO
    term enrichment analysis on a newly sequenced species, from in-house
    microarray results. The genomic data is public (released by
    DOE-JGI), but not available from a public database yet, therefore
    the gene product IDs are not recognized by e.g. AmiGO's enrichment
    tool. The user has a list of IDs of differentially expressed
    transcript, and a table provided by the sequencing lab that contains
    all transcript IDs and automatically-generated GO term assignments.
    Could anyone please recommend a tool?

    The latest email on this subject (containing most of the pertaining
    GO-help correspondence, bottom to top) is here:
    https://mailman.stanford.edu/pipermail/go-helpdesk/2012-June/005212.html

    Many thanks,
    Paola Roncaglia

    -- 
    Dr Paola Roncaglia
    GO Editorial Office
    EMBL-EBI
    Wellcome Trust Genome Campus
    Hinxton
    Cambridgeshire, UK
    CB10 1SD
    p: +44 1223 492600 <tel:%2B44%201223%20492600>
    f: +44 1223 494468 <tel:%2B44%201223%20494468>

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    go-friends at lists.stanford.edu <mailto:go-friends at lists.stanford.edu>
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