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    Dear Maurice,<br>
    <br>
    Thank you for your prompt suggestion. I'm cc-ing the user (with his
    correct email address this time) so he may explore your suggestion
    and get in touch with you directly if needed.<br>
    <br>
    Best regards,<br>
    Paola Roncaglia <br>
    <br>
    -------- Original Message --------
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          <th align="RIGHT" nowrap="nowrap" valign="BASELINE">Subject: </th>
          <td>Re: [go-friends] GO enrichment analysis - IDs not in
            database</td>
        </tr>
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          <th align="RIGHT" nowrap="nowrap" valign="BASELINE">Date: </th>
          <td>Thu, 28 Jun 2012 10:52:11 -0500</td>
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          <th align="RIGHT" nowrap="nowrap" valign="BASELINE">From: </th>
          <td>Maurice Ling <a class="moz-txt-link-rfc2396E" href="mailto:mauriceling@gmail.com"><mauriceling@gmail.com></a></td>
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          <th align="RIGHT" nowrap="nowrap" valign="BASELINE">Reply-To:
          </th>
          <td><a class="moz-txt-link-abbreviated" href="mailto:mauriceling@acm.org">mauriceling@acm.org</a></td>
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          <th align="RIGHT" nowrap="nowrap" valign="BASELINE">To: </th>
          <td>Paola Roncaglia <a class="moz-txt-link-rfc2396E" href="mailto:paola@ebi.ac.uk"><paola@ebi.ac.uk></a></td>
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    <br>
    <br>
    Dear Paola<br>
    <br>
    I wrote a script to process the GO-mapping raw files before which
    may be of help to you - <a moz-do-not-send="true"
      href="http://ojs.pythonpapers.org/index.php/tppsc/article/view/234">http://ojs.pythonpapers.org/index.php/tppsc/article/view/234</a>.<br>
    Attached is my manuscript and files.<br>
    <br>
    Please kindly let me know.<br>
    <br clear="all">
    Maurice LING<br>
    mobile: +1(605)5920300, +6596669233<br>
    www: <a moz-do-not-send="true" href="http://maurice.vodien.com"
      target="_blank">http://maurice.vodien.com</a><br>
    CV: <a moz-do-not-send="true"
      href="http://maurice.vodien.com/maurice_resume.pdf"
      target="_blank">http://maurice.vodien.com/maurice_resume.pdf</a><br>
    Linkedin: <a moz-do-not-send="true"
      href="http://www.linkedin.com/in/mauriceling" target="_blank">http://www.linkedin.com/in/mauriceling</a><br>
    ResearchGate: <a moz-do-not-send="true"
      href="https://www.researchgate.net/profile/Maurice_HT_Ling"
      target="_blank">https://www.researchgate.net/profile/Maurice_HT_Ling</a><br>
    <br>
    <br>
    <div class="gmail_quote">On Thu, Jun 28, 2012 at 10:48 AM, Paola
      Roncaglia <span dir="ltr"><<a moz-do-not-send="true"
          href="mailto:paola@ebi.ac.uk" target="_blank">paola@ebi.ac.uk</a>></span>
      wrote:<br>
      <blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex;
        border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
        Hello,<br>
        <br>
        We have a GO user (cc'd on this email) who would like to perform
        GO term enrichment analysis on a newly sequenced species, from
        in-house microarray results. The genomic data is public
        (released by DOE-JGI), but not available from a public database
        yet, therefore the gene product IDs are not recognized by e.g.
        AmiGO's enrichment tool. The user has a list of IDs of
        differentially expressed transcript, and a table provided by the
        sequencing lab that contains all transcript IDs and
        automatically-generated GO term assignments. Could anyone please
        recommend a tool?<br>
        <br>
        The latest email on this subject (containing most of the
        pertaining GO-help correspondence, bottom to top) is here:<br>
        <a moz-do-not-send="true"
href="https://mailman.stanford.edu/pipermail/go-helpdesk/2012-June/005212.html"
          target="_blank">https://mailman.stanford.edu/pipermail/go-helpdesk/2012-June/005212.html</a><br>
        <br>
        Many thanks,<br>
        Paola Roncaglia<br>
        <br>
        -- <br>
        Dr Paola Roncaglia<br>
        GO Editorial Office<br>
        EMBL-EBI<br>
        Wellcome Trust Genome Campus<br>
        Hinxton<br>
        Cambridgeshire, UK<br>
        CB10 1SD<br>
        p: <a moz-do-not-send="true" href="tel:%2B44%201223%20492600"
          value="+441223492600" target="_blank">+44 1223 492600</a><br>
        f: <a moz-do-not-send="true" href="tel:%2B44%201223%20494468"
          value="+441223494468" target="_blank">+44 1223 494468</a><br>
        <br>
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          href="mailto:go-friends@lists.stanford.edu" target="_blank">go-friends@lists.stanford.edu</a><br>
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          href="https://mailman.stanford.edu/mailman/listinfo/go-friends"
          target="_blank">https://mailman.stanford.edu/mailman/listinfo/go-friends</a><br>
      </blockquote>
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