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[Ontology-editors] adding obo2obo to check pipeline

Chris Mungall cjm at
Fri Mar 19 14:56:06 PDT 2010

Mike et al

I've added a call to obo2obo to

Although obo2obo is not guaranteed to fail for an invalid file because  
obo format is so loose, this should still allow us to proactively be  
buffered against a wider spectrum of possible things that could go  

Note this is disabled by default. To enable it, run --enable-obo2obo-check  

Or change the script to remove this line

	$disabled{'obo2obo-check'} = 1;

Before you do this, you need to check that obo2obo is in the path  
available to the cron job. I believe this must already be the case as  
it's used in other portions of the pipeline, but I don't want to  
enable this by default until you've checked it.


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