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[Software-group] [Go] [go] annotations for refgenomes

Chris Mungall cjm at fruitfly.org
Fri Feb 29 12:48:24 PST 2008


Is anyone aware of wrapped software to automate / batch run the Excel  
part of this?

Has anyone tried this? [perl]
http://search.cpan.org/dist/Spreadsheet-WriteExcel/

Or this? [java]
http://poi.apache.org/index.html



On Feb 28, 2008, at 2:50 PM, Mike Cherry wrote:

> Beware of Hack, no guarantee is assumed or implied.
>
> Look in go/software/utilities/ for
>
>    referencegenomemetrics-with-root.pl
>    refgenomemetrics-with-root.csh
>
> Run refgenomemetrics-with-root.csh from the go directory, it will
> gzcat the gene association files and pipe the output to
> referencegenomemetrics-with-root.pl
>
> Enjoy,
> Mike
>
> On Feb 28, 2008, at 12:58 PM, Suzanna Lewis wrote:
>
>> Ah, a challenge ;-)
>>
>> Sure, send us both the code. Better yet, please commit it to the
>> repository. We need to run this regularly to be able to report
>> progress and it is a useful tool to have in the toolkit.
>>
>> -S
>>
>> On Feb 28, 2008, at 12:24 PM, Mike Cherry wrote:
>>
>>> I'm happy to send the script that makes the data used to generate
>>> the graph to anyone that wants it.  For my purpose the original
>>> graph is perfect.
>>>
>>> -Mike
>>>
>>>
>
> _______________________________________________
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> Go at geneontology.org
> http://fafner.stanford.edu/mailman/listinfo/go
>




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