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[go-software] GO Help query (from website)
tonys at ebi.ac.uk
Wed Apr 18 02:35:29 PDT 2012
I have just confirmed that the EBI mirror is up & running:
$ mysql -hmysql.ebi.ac.uk -ugo_select -pamigo -P4085 go_latest -e "show
| Database |
| information_schema |
| go_latest |
Can you try to connect again, and see whether the problem still exists?
On 18/04/12 10:22, Paola Roncaglia wrote:
> Dear Quentin,
> Thank you for writing to GO.
> I am forwarding your message to the GO Software group so they may look
> into this.
> Thanks again and best regards,
> Paola Roncaglia, for GO help.
>> GO Help query (from website)
>> delettre at ipmc.cnrs.fr
>> Wed, 18 Apr 2012 00:36:53 -0700
>> go-helpdesk at mailman.stanford.edu
>> Email: delettre at ipmc.cnrs.fr
>> Name: General query (from Quentin Delettre)
>> Text: Dear Gene ontology member,
>> I am involved in a bioinformatic/chemoinformatic project : the aim is to improve availability and quality of data in a small drugs database ( http://chemoinfo.ipmc.cnrs.fr/MOLDB/index.html ). We want to provide the users informations about drugs targets available.
>> In this aim, we plan to use ontologies from your database. Before making a local mirror, I tried to make some queries like described here : http://www.geneontology.org/GO.database.shtml#SQL ( mysql -hmysql.ebi.ac.uk -ugo_select -pamigo -P4085 go_latest )
>> In a mysql client and through a python script, I go this error :
>> ERROR 2003 (HY000): Can't connect to MySQL server on 'mysql.ebi.ac.uk' (110)
>> I am wrong somewhere or is there a problem on your side -like server usage full- ?
>> Thank you for your help.
>> Best regards,
>> Quentin Delettre, Bioinformatician
>> Institut de Pharmacologie molÃ©culaire et Cellulaire - CNRS
>> 660 Route des Lucioles
>> 06560 Valbonne
>> email : delettre at ipmc.cnrs.fr
> Dr Paola Roncaglia
> GO Editorial Office
> Wellcome Trust Genome Campus
> Cambridgeshire, UK
> CB10 1SD
> p: +44 1223 492600
> f: +44 1223 494468
> go-software mailing list
> go-software at lists.stanford.edu
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