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[p4-feedback] more than "64,000" entity expansions parser error

Bo De Lange bodelange at gmail.com
Tue Mar 11 06:48:12 PDT 2008


Does the error below say my ontology is too big?

Bo
-----------------------

cwd: C:\Program Files (x86)\Protege_4.0_alpha
cmd: "C:\Program Files\Java\jre1.6.0_05\bin\java.exe" -Xms104857600
-Xmx2097152000 -Dosgi.clean=true
 -classpath "C:\Program Files
(x86)\Protege_4.0_alpha\org.eclipse.osgi_3.3.0.v20070530.jar;C:\Progra
m Files (x86)\Protege_4.0_alpha\lax.jar;" com.zerog.lax.LAX "C:/Program
Files (x86)/Protege_4.0_alph
a/Protege.lax" "C:/Documents and Settings/Bo/Local Settings/Temp/laxB3.tmp"
Starting Protege 4 OWL Editor
Platform:
    Framework: Eclipse (1.4.0)
    OS: Windows2003 (5.2)
    Processor: amd64
Could not install plugin in file/directory named
plugins\uk.ac.manchester.cs.owl.factplusplus.jar: o
rg.osgi.framework.BundleException: No Bundle-NativeCode match
Installed plugin Pellet Reasoner
Installed plugin Bookmark View
Installed plugin Browser View (OWLDoc)
Installed plugin Cardinality View
Installed plugin Cloud Views
Installed plugin DL Query Tab
Installed plugin Existential Tree
Installed plugin Matrix Views
Installed plugin Owlviz Plug-in
Installed plugin Taxonomy Example View
Installed plugin owleditor
Installed plugin The OWL API
Installed plugin Ontology Processing Language
Exception caught initializing editor
org.semanticweb.owl.model.OWLOntologyCreationException: Problem parsing
file:/C:/Documents%20and%20S
ettings/Bo/Bureaublad/Backup71/OWL-v01.owl
Could not parse ontology.  Either a suitable parser could not be found, or
parsing failed.  See pars
er logs below for explanation.
The following parsers were tried.
1) org.coode.owl.rdfxml.parser.RDFXMLParser
2) org.coode.owl.owlxmlparser.OWLXMLParser
3) org.coode.owl.functionalparser.OWLFunctionalSyntaxOWLParser
4) org.coode.manchesterowlsyntax.ManchesterOWLSyntaxOntologyParser
5) de.uulm.ecs.ai.owl.krssparser.KRSS2OWLParser
6) org.coode.obo.parser.OWLOBOParser


Detailed logs:
--------------------------------------------------------------------------------
Parser class: org.coode.owl.rdfxml.parser.RDFXMLParser
org.xml.sax.SAXParseException: The parser has encountered more than "64,000"
entity expansions in th
is document; this is the limit imposed by the application.

    Stack trace:
        org.coode.owl.rdfxml.parser.RDFXMLParser.parse(RDFXMLParser.java:90)
        uk.ac.manchester.cs.owl.ParsableOWLOntologyFactory.loadOWLOntology
(ParsableOWLOntologyFactor
y.java:157)
        uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntology(
OWLOntologyManagerImpl.java:347)


uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntologyFromPhysicalURI
(OWLOntologyManage
rImpl.java:335)
        uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntology(
OWLOntologyManagerImpl.java:324)

        org.protege.editor.owl.model.OWLModelManagerImpl.loadOntology(
OWLModelManagerImpl.java:267)

org.protege.editor.owl.model.OWLModelManagerImpl.loadOntologyFromPhysicalURI
(OWLModelManager
Impl.java:301)
        org.protege.editor.owl.OWLEditorKit.handleLoadRequest(
OWLEditorKit.java:155)
        org.protege.editor.core.ProtegeManager.openAndSetupEditorKit(
ProtegeManager.java:149)

org.protege.editor.core.ProtegeWelcomeFrame$ProtegeWelcomePanel$2.actionPerformed
(ProtegeWel
comeFrame.java:111)
        org.protege.editor.core.ui.util.LinkLabel.activateLink(
LinkLabel.java:97)
        org.protege.editor.core.ui.util.LinkLabel.access$100(LinkLabel.java
:30)
        org.protege.editor.core.ui.util.LinkLabel$1.mouseReleased(
LinkLabel.java:63)
        java.awt.Component.processMouseEvent(Unknown Source)
        javax.swing.JComponent.processMouseEvent(Unknown Source)
        java.awt.Component.processEvent(Unknown Source)
        java.awt.Container.processEvent(Unknown Source)
        java.awt.Component.dispatchEventImpl(Unknown Source)
        java.awt.Container.dispatchEventImpl(Unknown Source)

-- 
Bo de Lange

RPJ de Lange, PhD
Emotional Brain BV
Louis Armstrongweg 78
1311 RL Almere

tel : +31 (0)36 - 546 83 46
fax : +31 (0)36 - 549 71 86
e-mail : b.delange at emotionalbrain.nl
web : http://www.emotionalbrain.nl
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