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[p4-feedback] Error with "Open recent"

Nick Drummond nick.drummond at cs.manchester.ac.uk
Wed Mar 26 09:52:49 PDT 2008


Cody,

I have no local version of the imported ontology and its not available  
on the web at [1].
This is causing it to fall over for me (if you have a copy of the  
imported ontology please send it to me).
However, P4 should gracefully handle missing imports and currently  
doesn't (I think it used to) - I'll look into it.

Cheers

Nick

[1] http://www.burlesontech.com/ontologies/bc/bc.owl


On 23 Mar 2008, at 22:09, Cody Burleson wrote:

> I am experiencing an error when I launch Protege 4 and choose to  
> "Open recent" on one of my OWL files (stack trace provided). If I  
> open the ontology it includes first, and then open the file in the  
> same frame, I do not get the error. The problematic OWL file is also  
> attached.
>
> Please let me know if I am doing something wrong or track it as  
> defect.
>
>
> STACK TRACE
>
> =============
> Error 1 Logged at Sun Mar 23 17:01:27 CDT 2008
> OWLOntologyCreationException: Problem parsing file:/Users/cburleson/ 
> ontologies/kb-person/kb-person.owl
> Could not parse ontology.  Either a suitable parser could not be  
> found, or parsing failed.  See parser logs below for explanation.
> The following parsers were tried.
> 1) org.coode.owl.rdfxml.parser.RDFXMLParser
> 2) org.coode.owl.owlxmlparser.OWLXMLParser
> 3) org.coode.owl.functionalparser.OWLFunctionalSyntaxOWLParser
> 4) org.coode.manchesterowlsyntax.ManchesterOWLSyntaxOntologyParser
> 5) de.uulm.ecs.ai.owl.krssparser.KRSS2OWLParser
> 6) org.coode.obo.parser.OWLOBOParser
>
>
> Detailed logs:
> --------------------------------------------------------------------------------
> Parser class: org.coode.owl.rdfxml.parser.RDFXMLParser
> org.semanticweb.owl.model.OWLOntologyCreationException:  
> java.io.FileNotFoundException: http://www.burlesontech.com/ontologies/bc/bc.owl
>
>     Stack trace:
>          
> org 
> .coode 
> .owl 
> .rdfxml 
> .parser 
> .OWLRDFConsumer.statementWithResourceValue(OWLRDFConsumer.java:1212)
>          
> edu 
> .unika 
> .aifb 
> .rdf.api.syntax.RDFParser.statementWithResourceValue(RDFParser.java: 
> 475)
>         edu.unika.aifb.rdf.api.syntax.RDFParser 
> $EmptyPropertyElement.startElement(RDFParser.java:918)
>         edu.unika.aifb.rdf.api.syntax.RDFParser 
> $PropertyElementList.startElement(RDFParser.java:802)
>          
> edu.unika.aifb.rdf.api.syntax.RDFParser.startElement(RDFParser.java: 
> 212)
>         org.coode.owl.rdfxml.parser.RDFXMLParser 
> $1.startElement(RDFXMLParser.java:67)
>          
> com 
> .sun 
> .org 
> .apache 
> .xerces 
> .internal 
> .parsers.AbstractSAXParser.startElement(AbstractSAXParser.java:533)
>          
> com 
> .sun 
> .org 
> .apache 
> .xerces 
> .internal 
> .parsers 
> .AbstractXMLDocumentParser 
> .emptyElement(AbstractXMLDocumentParser.java:220)
>          
> com 
> .sun 
> .org 
> .apache 
> .xerces 
> .internal.impl.dtd.XMLDTDValidator.emptyElement(XMLDTDValidator.java: 
> 819)
>          
> com 
> .sun 
> .org 
> .apache 
> .xerces 
> .internal 
> .impl 
> .XMLNSDocumentScannerImpl 
> .scanStartElement(XMLNSDocumentScannerImpl.java:322)
>          
> com 
> .sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl 
> $ 
> FragmentContentDispatcher 
> .dispatch(XMLDocumentFragmentScannerImpl.java:1693)
>          
> com 
> .sun 
> .org 
> .apache 
> .xerces 
> .internal 
> .impl 
> .XMLDocumentFragmentScannerImpl 
> .scanDocument(XMLDocumentFragmentScannerImpl.java:368)
>          
> com 
> .sun 
> .org 
> .apache 
> .xerces 
> .internal.parsers.XML11Configuration.parse(XML11Configuration.java: 
> 834)
>          
> com 
> .sun 
> .org 
> .apache 
> .xerces 
> .internal.parsers.XML11Configuration.parse(XML11Configuration.java: 
> 764)
>          
> com 
> .sun 
> .org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java: 
> 148)
>          
> com 
> .sun 
> .org 
> .apache 
> .xerces 
> .internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1242)
>         javax.xml.parsers.SAXParser.parse(SAXParser.java:375)
>         edu.unika.aifb.rdf.api.syntax.RDFParser.parse(RDFParser.java: 
> 111)
>          
> org.coode.owl.rdfxml.parser.RDFXMLParser.parse(RDFXMLParser.java:86)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .ParsableOWLOntologyFactory 
> .loadOWLOntology(ParsableOWLOntologyFactory.java:157)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 347)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .OWLOntologyManagerImpl 
> .loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:335)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 324)
>          
> org 
> .protege 
> .editor 
> .owl.model.OWLModelManagerImpl.loadOntology(OWLModelManagerImpl.java: 
> 245)
>          
> org 
> .protege 
> .editor 
> .owl 
> .model 
> .OWLModelManagerImpl 
> .loadOntologyFromPhysicalURI(OWLModelManagerImpl.java:279)
>          
> org 
> .protege 
> .editor.owl.OWLEditorKit.handleLoadRecentRequest(OWLEditorKit.java: 
> 135)
>          
> org 
> .protege 
> .editor 
> .core.ProtegeManager.openAndSetupRecentEditorKit(ProtegeManager.java: 
> 176)
>         org.protege.editor.core.ProtegeWelcomeFrame 
> $ProtegeWelcomePanel$4.actionPerformed(ProtegeWelcomeFrame.java:156)
>          
> org 
> .protege.editor.core.ui.util.LinkLabel.activateLink(LinkLabel.java:97)
>         org.protege.editor.core.ui.util.LinkLabel.access 
> $100(LinkLabel.java:30)
>         org.protege.editor.core.ui.util.LinkLabel 
> $1.mouseReleased(LinkLabel.java:63)
>         java.awt.Component.processMouseEvent(Component.java:5602)
>         javax.swing.JComponent.processMouseEvent(JComponent.java:3135)
>         java.awt.Component.processEvent(Component.java:5367)
>         java.awt.Container.processEvent(Container.java:2010)
>         java.awt.Component.dispatchEventImpl(Component.java:4068)
>         java.awt.Container.dispatchEventImpl(Container.java:2068)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>          
> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4256)
>          
> java.awt.LightweightDispatcher.processMouseEvent(Container.java:3936)
>         java.awt.LightweightDispatcher.dispatchEvent(Container.java: 
> 3866)
>         java.awt.Container.dispatchEventImpl(Container.java:2054)
>         java.awt.Window.dispatchEventImpl(Window.java:1791)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>         java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
>          
> java 
> .awt 
> .EventDispatchThread 
> .pumpOneEventForHierarchy(EventDispatchThread.java:269)
>          
> java 
> .awt 
> .EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java: 
> 190)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:184)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:176)
>         java.awt.EventDispatchThread.run(EventDispatchThread.java:110)
>
>
> --------------------------------------------------------------------------------
> Parser class: org.coode.owl.owlxmlparser.OWLXMLParser
> org.coode.owl.owlxmlparser.OWLXMLParserUnknownElementType: Unkown  
> element type: http://www.w3.org/1999/02/22-rdf-syntax-ns#RDF (Line 25)
>
>     Stack trace:
>          
> org.coode.owl.owlxmlparser.OWLXMLParser.parse(OWLXMLParser.java:67)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .ParsableOWLOntologyFactory 
> .loadOWLOntology(ParsableOWLOntologyFactory.java:157)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 347)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .OWLOntologyManagerImpl 
> .loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:335)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 324)
>          
> org 
> .protege 
> .editor 
> .owl.model.OWLModelManagerImpl.loadOntology(OWLModelManagerImpl.java: 
> 245)
>          
> org 
> .protege 
> .editor 
> .owl 
> .model 
> .OWLModelManagerImpl 
> .loadOntologyFromPhysicalURI(OWLModelManagerImpl.java:279)
>          
> org 
> .protege 
> .editor.owl.OWLEditorKit.handleLoadRecentRequest(OWLEditorKit.java: 
> 135)
>          
> org 
> .protege 
> .editor 
> .core.ProtegeManager.openAndSetupRecentEditorKit(ProtegeManager.java: 
> 176)
>         org.protege.editor.core.ProtegeWelcomeFrame 
> $ProtegeWelcomePanel$4.actionPerformed(ProtegeWelcomeFrame.java:156)
>          
> org 
> .protege.editor.core.ui.util.LinkLabel.activateLink(LinkLabel.java:97)
>         org.protege.editor.core.ui.util.LinkLabel.access 
> $100(LinkLabel.java:30)
>         org.protege.editor.core.ui.util.LinkLabel 
> $1.mouseReleased(LinkLabel.java:63)
>         java.awt.Component.processMouseEvent(Component.java:5602)
>         javax.swing.JComponent.processMouseEvent(JComponent.java:3135)
>         java.awt.Component.processEvent(Component.java:5367)
>         java.awt.Container.processEvent(Container.java:2010)
>         java.awt.Component.dispatchEventImpl(Component.java:4068)
>         java.awt.Container.dispatchEventImpl(Container.java:2068)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>          
> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4256)
>          
> java.awt.LightweightDispatcher.processMouseEvent(Container.java:3936)
>         java.awt.LightweightDispatcher.dispatchEvent(Container.java: 
> 3866)
>         java.awt.Container.dispatchEventImpl(Container.java:2054)
>         java.awt.Window.dispatchEventImpl(Window.java:1791)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>         java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
>          
> java 
> .awt 
> .EventDispatchThread 
> .pumpOneEventForHierarchy(EventDispatchThread.java:269)
>          
> java 
> .awt 
> .EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java: 
> 190)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:184)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:176)
>         java.awt.EventDispatchThread.run(EventDispatchThread.java:110)
>
>
> --------------------------------------------------------------------------------
> Parser class:  
> org.coode.owl.functionalparser.OWLFunctionalSyntaxOWLParser
> org.coode.owl.functionalparser.ParseException: Encountered "<" at  
> line 1, column 1.
> Was expecting one of:
>     "Ontology" ...
>     "Namespace" ...
>      (Line 0)
>
>     Stack trace:
>          
> org 
> .coode 
> .owl 
> .functionalparser 
> .OWLFunctionalSyntaxOWLParser 
> .parse(OWLFunctionalSyntaxOWLParser.java:62)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .ParsableOWLOntologyFactory 
> .loadOWLOntology(ParsableOWLOntologyFactory.java:157)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 347)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .OWLOntologyManagerImpl 
> .loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:335)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 324)
>          
> org 
> .protege 
> .editor 
> .owl.model.OWLModelManagerImpl.loadOntology(OWLModelManagerImpl.java: 
> 245)
>          
> org 
> .protege 
> .editor 
> .owl 
> .model 
> .OWLModelManagerImpl 
> .loadOntologyFromPhysicalURI(OWLModelManagerImpl.java:279)
>          
> org 
> .protege 
> .editor.owl.OWLEditorKit.handleLoadRecentRequest(OWLEditorKit.java: 
> 135)
>          
> org 
> .protege 
> .editor 
> .core.ProtegeManager.openAndSetupRecentEditorKit(ProtegeManager.java: 
> 176)
>         org.protege.editor.core.ProtegeWelcomeFrame 
> $ProtegeWelcomePanel$4.actionPerformed(ProtegeWelcomeFrame.java:156)
>          
> org 
> .protege.editor.core.ui.util.LinkLabel.activateLink(LinkLabel.java:97)
>         org.protege.editor.core.ui.util.LinkLabel.access 
> $100(LinkLabel.java:30)
>         org.protege.editor.core.ui.util.LinkLabel 
> $1.mouseReleased(LinkLabel.java:63)
>         java.awt.Component.processMouseEvent(Component.java:5602)
>         javax.swing.JComponent.processMouseEvent(JComponent.java:3135)
>         java.awt.Component.processEvent(Component.java:5367)
>         java.awt.Container.processEvent(Container.java:2010)
>         java.awt.Component.dispatchEventImpl(Component.java:4068)
>         java.awt.Container.dispatchEventImpl(Container.java:2068)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>          
> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4256)
>          
> java.awt.LightweightDispatcher.processMouseEvent(Container.java:3936)
>         java.awt.LightweightDispatcher.dispatchEvent(Container.java: 
> 3866)
>         java.awt.Container.dispatchEventImpl(Container.java:2054)
>         java.awt.Window.dispatchEventImpl(Window.java:1791)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>         java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
>          
> java 
> .awt 
> .EventDispatchThread 
> .pumpOneEventForHierarchy(EventDispatchThread.java:269)
>          
> java 
> .awt 
> .EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java: 
> 190)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:184)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:176)
>         java.awt.EventDispatchThread.run(EventDispatchThread.java:110)
>
>
> --------------------------------------------------------------------------------
> Parser class:  
> org.coode.manchesterowlsyntax.ManchesterOWLSyntaxOntologyParser
> org.semanticweb.owl.expression.ParserException: Encountered <?xml at  
> line 0 column 0. Expected one of:
>     ValuePartition:
>     Individual:
>     DataProperty:
>     Imports:
>     ObjectProperty:
>     Class:
>
>
>     Stack trace:
>          
> org 
> .coode 
> .manchesterowlsyntax 
> .ManchesterOWLSyntaxOntologyParser 
> .parse(ManchesterOWLSyntaxOntologyParser.java:77)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .ParsableOWLOntologyFactory 
> .loadOWLOntology(ParsableOWLOntologyFactory.java:157)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 347)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .OWLOntologyManagerImpl 
> .loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:335)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 324)
>          
> org 
> .protege 
> .editor 
> .owl.model.OWLModelManagerImpl.loadOntology(OWLModelManagerImpl.java: 
> 245)
>          
> org 
> .protege 
> .editor 
> .owl 
> .model 
> .OWLModelManagerImpl 
> .loadOntologyFromPhysicalURI(OWLModelManagerImpl.java:279)
>          
> org 
> .protege 
> .editor.owl.OWLEditorKit.handleLoadRecentRequest(OWLEditorKit.java: 
> 135)
>          
> org 
> .protege 
> .editor 
> .core.ProtegeManager.openAndSetupRecentEditorKit(ProtegeManager.java: 
> 176)
>         org.protege.editor.core.ProtegeWelcomeFrame 
> $ProtegeWelcomePanel$4.actionPerformed(ProtegeWelcomeFrame.java:156)
>          
> org 
> .protege.editor.core.ui.util.LinkLabel.activateLink(LinkLabel.java:97)
>         org.protege.editor.core.ui.util.LinkLabel.access 
> $100(LinkLabel.java:30)
>         org.protege.editor.core.ui.util.LinkLabel 
> $1.mouseReleased(LinkLabel.java:63)
>         java.awt.Component.processMouseEvent(Component.java:5602)
>         javax.swing.JComponent.processMouseEvent(JComponent.java:3135)
>         java.awt.Component.processEvent(Component.java:5367)
>         java.awt.Container.processEvent(Container.java:2010)
>         java.awt.Component.dispatchEventImpl(Component.java:4068)
>         java.awt.Container.dispatchEventImpl(Container.java:2068)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>          
> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4256)
>          
> java.awt.LightweightDispatcher.processMouseEvent(Container.java:3936)
>         java.awt.LightweightDispatcher.dispatchEvent(Container.java: 
> 3866)
>         java.awt.Container.dispatchEventImpl(Container.java:2054)
>         java.awt.Window.dispatchEventImpl(Window.java:1791)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>         java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
>          
> java 
> .awt 
> .EventDispatchThread 
> .pumpOneEventForHierarchy(EventDispatchThread.java:269)
>          
> java 
> .awt 
> .EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java: 
> 190)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:184)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:176)
>         java.awt.EventDispatchThread.run(EventDispatchThread.java:110)
>
>
> --------------------------------------------------------------------------------
> Parser class: de.uulm.ecs.ai.owl.krssparser.KRSS2OWLParser
> de.uulm.ecs.ai.owl.krssparser.ParseException: Encountered "<?xml  
> version=\"1.0\"?>" at line 1, column 1.
> Was expecting one of:
>     <EOF>
>     "(" ...
>     "end-tbox" ...
>     "end-abox" ...
>
>
>     Stack trace:
>          
> de 
> .uulm.ecs.ai.owl.krssparser.KRSS2OWLParser.parse(KRSS2OWLParser.java: 
> 61)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .ParsableOWLOntologyFactory 
> .loadOWLOntology(ParsableOWLOntologyFactory.java:157)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 347)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .OWLOntologyManagerImpl 
> .loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:335)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 324)
>          
> org 
> .protege 
> .editor 
> .owl.model.OWLModelManagerImpl.loadOntology(OWLModelManagerImpl.java: 
> 245)
>          
> org 
> .protege 
> .editor 
> .owl 
> .model 
> .OWLModelManagerImpl 
> .loadOntologyFromPhysicalURI(OWLModelManagerImpl.java:279)
>          
> org 
> .protege 
> .editor.owl.OWLEditorKit.handleLoadRecentRequest(OWLEditorKit.java: 
> 135)
>          
> org 
> .protege 
> .editor 
> .core.ProtegeManager.openAndSetupRecentEditorKit(ProtegeManager.java: 
> 176)
>         org.protege.editor.core.ProtegeWelcomeFrame 
> $ProtegeWelcomePanel$4.actionPerformed(ProtegeWelcomeFrame.java:156)
>          
> org 
> .protege.editor.core.ui.util.LinkLabel.activateLink(LinkLabel.java:97)
>         org.protege.editor.core.ui.util.LinkLabel.access 
> $100(LinkLabel.java:30)
>         org.protege.editor.core.ui.util.LinkLabel 
> $1.mouseReleased(LinkLabel.java:63)
>         java.awt.Component.processMouseEvent(Component.java:5602)
>         javax.swing.JComponent.processMouseEvent(JComponent.java:3135)
>         java.awt.Component.processEvent(Component.java:5367)
>         java.awt.Container.processEvent(Container.java:2010)
>         java.awt.Component.dispatchEventImpl(Component.java:4068)
>         java.awt.Container.dispatchEventImpl(Container.java:2068)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>          
> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4256)
>          
> java.awt.LightweightDispatcher.processMouseEvent(Container.java:3936)
>         java.awt.LightweightDispatcher.dispatchEvent(Container.java: 
> 3866)
>         java.awt.Container.dispatchEventImpl(Container.java:2054)
>         java.awt.Window.dispatchEventImpl(Window.java:1791)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>         java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
>          
> java 
> .awt 
> .EventDispatchThread 
> .pumpOneEventForHierarchy(EventDispatchThread.java:269)
>          
> java 
> .awt 
> .EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java: 
> 190)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:184)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:176)
>         java.awt.EventDispatchThread.run(EventDispatchThread.java:110)
>
>
> --------------------------------------------------------------------------------
> Parser class: org.coode.obo.parser.OWLOBOParser
> org.coode.obo.parser.ParseException: Encountered "<!DOCTYPE rdf" at  
> line 4, column 1.
> Was expecting:
>     "\n" ...
>
>
>     Stack trace:
>         org.coode.obo.parser.OWLOBOParser.parse(OWLOBOParser.java:59)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .ParsableOWLOntologyFactory 
> .loadOWLOntology(ParsableOWLOntologyFactory.java:157)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 347)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .OWLOntologyManagerImpl 
> .loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:335)
>          
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 324)
>          
> org 
> .protege 
> .editor 
> .owl.model.OWLModelManagerImpl.loadOntology(OWLModelManagerImpl.java: 
> 245)
>          
> org 
> .protege 
> .editor 
> .owl 
> .model 
> .OWLModelManagerImpl 
> .loadOntologyFromPhysicalURI(OWLModelManagerImpl.java:279)
>          
> org 
> .protege 
> .editor.owl.OWLEditorKit.handleLoadRecentRequest(OWLEditorKit.java: 
> 135)
>          
> org 
> .protege 
> .editor 
> .core.ProtegeManager.openAndSetupRecentEditorKit(ProtegeManager.java: 
> 176)
>         org.protege.editor.core.ProtegeWelcomeFrame 
> $ProtegeWelcomePanel$4.actionPerformed(ProtegeWelcomeFrame.java:156)
>          
> org 
> .protege.editor.core.ui.util.LinkLabel.activateLink(LinkLabel.java:97)
>         org.protege.editor.core.ui.util.LinkLabel.access 
> $100(LinkLabel.java:30)
>         org.protege.editor.core.ui.util.LinkLabel 
> $1.mouseReleased(LinkLabel.java:63)
>         java.awt.Component.processMouseEvent(Component.java:5602)
>         javax.swing.JComponent.processMouseEvent(JComponent.java:3135)
>         java.awt.Component.processEvent(Component.java:5367)
>         java.awt.Container.processEvent(Container.java:2010)
>         java.awt.Component.dispatchEventImpl(Component.java:4068)
>         java.awt.Container.dispatchEventImpl(Container.java:2068)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>          
> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4256)
>          
> java.awt.LightweightDispatcher.processMouseEvent(Container.java:3936)
>         java.awt.LightweightDispatcher.dispatchEvent(Container.java: 
> 3866)
>         java.awt.Container.dispatchEventImpl(Container.java:2054)
>         java.awt.Window.dispatchEventImpl(Window.java:1791)
>         java.awt.Component.dispatchEvent(Component.java:3903)
>         java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
>          
> java 
> .awt 
> .EventDispatchThread 
> .pumpOneEventForHierarchy(EventDispatchThread.java:269)
>          
> java 
> .awt 
> .EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java: 
> 190)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:184)
>          
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:176)
>         java.awt.EventDispatchThread.run(EventDispatchThread.java:110)
>
>
>
>      
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .ParsableOWLOntologyFactory 
> .loadOWLOntology(ParsableOWLOntologyFactory.java:226)
>      
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 347)
>      
> uk 
> .ac 
> .manchester 
> .cs 
> .owl 
> .OWLOntologyManagerImpl 
> .loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:335)
>      
> uk 
> .ac 
> .manchester 
> .cs 
> .owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java: 
> 324)
>      
> org 
> .protege 
> .editor 
> .owl.model.OWLModelManagerImpl.loadOntology(OWLModelManagerImpl.java: 
> 245)
>      
> org 
> .protege 
> .editor 
> .owl 
> .model 
> .OWLModelManagerImpl 
> .loadOntologyFromPhysicalURI(OWLModelManagerImpl.java:279)
>      
> org 
> .protege 
> .editor.owl.OWLEditorKit.handleLoadRecentRequest(OWLEditorKit.java: 
> 135)
>      
> org 
> .protege 
> .editor 
> .core.ProtegeManager.openAndSetupRecentEditorKit(ProtegeManager.java: 
> 176)
>     org.protege.editor.core.ProtegeWelcomeFrame$ProtegeWelcomePanel 
> $4.actionPerformed(ProtegeWelcomeFrame.java:156)
>      
> org 
> .protege.editor.core.ui.util.LinkLabel.activateLink(LinkLabel.java:97)
>     org.protege.editor.core.ui.util.LinkLabel.access 
> $100(LinkLabel.java:30)
>     org.protege.editor.core.ui.util.LinkLabel 
> $1.mouseReleased(LinkLabel.java:63)
>     java.awt.Component.processMouseEvent(Component.java:5602)
>     javax.swing.JComponent.processMouseEvent(JComponent.java:3135)
>     java.awt.Component.processEvent(Component.java:5367)
>     java.awt.Container.processEvent(Container.java:2010)
>     java.awt.Component.dispatchEventImpl(Component.java:4068)
>     java.awt.Container.dispatchEventImpl(Container.java:2068)
>     java.awt.Component.dispatchEvent(Component.java:3903)
>     java.awt.LightweightDispatcher.retargetMouseEvent(Container.java: 
> 4256)
>     java.awt.LightweightDispatcher.processMouseEvent(Container.java: 
> 3936)
>     java.awt.LightweightDispatcher.dispatchEvent(Container.java:3866)
>     java.awt.Container.dispatchEventImpl(Container.java:2054)
>     java.awt.Window.dispatchEventImpl(Window.java:1791)
>     java.awt.Component.dispatchEvent(Component.java:3903)
>     java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
>      
> java 
> .awt 
> .EventDispatchThread 
> .pumpOneEventForHierarchy(EventDispatchThread.java:269)
>      
> java 
> .awt 
> .EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java: 
> 190)
>     java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java: 
> 184)
>     java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java: 
> 176)
>     java.awt.EventDispatchThread.run(EventDispatchThread.java:110)
> ---------------------------------------------------------------------------------------------------
>
>
>
> =============
> -- 
> Cody Burleson
>
> Mobile: (214) 537-8783
> Fax: (469) 546-3691
> Client Site: (615) 725-1493
> Email and GTalk: cody at burlesontech.com <kb- 
> person.owl>_______________________________________________
> p4-feedback mailing list
> p4-feedback at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/p4-feedback

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